Table 2 GO classification of common down-regulated genes in both XT and ZF
Gene Ontology term | The number of Genes | -log10 (P value)* |
|---|---|---|
Cellular component | ||
ribosomal subunit (GO: 0044391) | 59 | 25.0200 |
cytosolic ribosome (GO: 0022626) | 67 | 23.1024 |
cytosolic part (GO: 0044445) | 69 | 21.3206 |
ribosome (GO: 0005840) | 77 | 20.5086 |
ribonucleoprotein complex (GO: 0030529) | 91 | 19.3747 |
cytosolic large ribosomal subunit (GO: 0022625) | 34 | 14.6536 |
large ribosomal subunit (GO: 0015934) | 34 | 13.6498 |
nucleolus (GO: 0005730) | 65 | 12.4437 |
cytosol (GO: 0005829) | 157 | 10.3215 |
membrane-enclosed lumen (GO: 0031974) | 88 | 10.2774 |
cytosolic small ribosomal subunit (GO: 0022627) | 24 | 9.7670 |
organelle lumen (GO: 0043233) | 86 | 9.6556 |
intracellular organelle lumen (GO: 0070013) | 86 | 9.6556 |
small ribosomal subunit (GO: 0015935) | 25 | 9.4776 |
nuclear lumen (GO: 0031981) | 80 | 9.4168 |
non-membrane-bounded organelle (GO: 0043228) | 118 | 8.3089 |
intracellular non-membrane-bounded organelle (GO: 0043232) | 118 | 8.3089 |
nuclear part (GO: 0044428) | 84 | 6.6144 |
intracellular organelle part (GO: 0044446) | 233 | 5.6180 |
organelle part (GO: 0044422) | 233 | 5.5031 |
vacuolar membrane (GO: 0005774) | 60 | 4.1891 |
vacuolar part (GO: 0044437) | 60 | 4.0645 |
cytoplasm (GO: 0005737) | 553 | 4.0376 |
chloroplast (GO: 0009507) | 140 | 4.0000 |
cell-cell junction (GO: 0005911) | 75 | 2.2676 |
plasmodesma (GO: 0009506) | 75 | 2.2676 |
cell junction (GO: 0030054) | 75 | 2.2676 |
symplast (GO: 0055044) | 75 | 2.2676 |
vacuole (GO: 0005773) | 75 | 1.8658 |
macromolecular complex (GO: 0032991) | 135 | 1.7261 |
cytoplasmic part (GO: 0044444) | 519 | 1.6070 |
Molecular function | ||
structural constituent of ribosome (GO: 0003735) | 66 | 22.5045 |
structural molecule activity (GO: 0005198) | 70 | 16.4921 |
glutamate-cysteine ligase activity (GO: 0004357) | 3 | 1.8413 |
Biological process | ||
translation (GO: 0006412) | 80 | 14.2749 |
gene expression (GO: 0010467) | 125 | 8.8182 |
cellular macromolecule biosynthetic process (GO: 0034645) | 112 | 5.7328 |
macromolecule biosynthetic process (GO: 0009059) | 112 | 5.3316 |
cellular biosynthetic process (GO: 0044249) | 175 | 5.1952 |
biosynthetic process (GO: 0009058) | 187 | 4.7235 |
organic substance biosynthetic process (GO: 1901576) | 175 | 3.8861 |
ribosome biogenesis (GO: 0042254) | 24 | 3.8239 |
metabolic process (GO: 0042254) | 580 | 2.9788 |
ribonucleoprotein complex biogenesis (GO: 0022613) | 26 | 2.5768 |
polysaccharide localization (GO: 0033037) | 9 | 2.2790 |
callose localization (GO: 0052545) | 9 | 2.2790 |
sulfur compound metabolic process (GO: 0006790) | 19 | 1.4773 |
defense response by callose deposition (GO: 0052542) | 7 | 1.4176 |