Table 3 Candidate genes of flavonoid biosynthetic pathway revealed by multiple evidences
From: Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis
Environment (Trait) | Candidate Gene | Gene interval (bp) | Annotation |
|---|---|---|---|
ZYE1(n1555, n1569), ZYE2(n1569) | AC206266.3_FG001* | chr9:17905187-17908271 | ATPase activity |
ZYE1(n1027), ZYE2(n1581) | AC233883.1_FG006# | chr4:193154792-193156631 | Unknown |
BBE2(n1201), ZYE2(n1240) | GRMZM2G016930* | chr9:16491882-16497920 | Hydrolase activity||Serine/threonine-protein phosphatase (EC 3.1.3.16) |
BBE1(n1370), AMPE1(n1370), AMPE2(n1569, n1570) | GRMZM2G017536# | chr1:47989435-47993634 | Unknown |
AMPE1(n1263) | GRMZM2G029547* | chr3: 215,757,514-215,764,384 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity |
ZYE2(n1570) | GRMZM2G031938# | chr1:245482582-245492124 | Antiporter activity |
BBE1(n1240) | GRMZM2G032047# | chr1:46124872-46126322 | Cp protein |
BBE1(n1370) | GRMZM2G036086# | chr1:47810317-47811419 | Peroxisomal biogenesis factor 11 family protein |
BBE2(n1173) | GRMZM2G043843# | chr3:230536114-230538220 | Unknown |
BBE2(n1575) | GRMZM2G054013* | chr4:158142358-158147479 | Catalytic activity |
ZYE2(n1555) | GRMZM2G063550* | chr9:17397398-17399594 | Anthocyanidin 3,5-O-glucosyltransferase |
BBE2(n1575) | GRMZM2G066615# | chr4:158338110-158345289 | ATP binding |
BBE2(n1201), ZYE2(n1240) | GRMZM2G075582# | chr9:16654134-16675731 | Unknown |
BBE1(n1370), AMPE2(n1555, n1562) | GRMZM2G076537# | chr1:47509293-47517202 | Exonuclease activity binding |
ZYE1(n1240), ZYE2(n1027, n1263) | GRMZM2G079471# | chr4:195326118-195331420 | Unknown |
AMPE1(n1581) | GRMZM2G097812* | chr9: 144,508,637-144,511,665 | Unknown |
BBE2(n1575) | GRMZM2G110192# | chr4:159724032-159726475 | Unknown |
BBE2(n1575) | GRMZM2G110287# | chr4:159754943-159757904 | Catalytic activity |
BBE2(n1270), AMPE1(n1201), AMPE2(n1201) | GRMZM2G114801# | chr6:120054604-120057326 | Unknown |
ZYE1(n1240), ZYE2(n1027, n1263) | GRMZM2G116675# | chr4:195200777-195206090 | Unknown |
BBE2(n1575) | GRMZM2G121075# | chr4:158558932-158560342 | 60S ribosomal protein L12 |
BBE1(n1370) | GRMZM2G122965# | chr1:47699083-47705236 | Microtubule motor activity |
ZYE1(n1240), ZYE2(n1027, n1263) | GRMZM2G125596# | chr4:195381313-195385012 | regulation of transcription, DNA-dependent |
BBE1(n1240) | GRMZM2G129302# | chr1:46863231-46865595 | Glycosyltransferase 5 |
BBE2(n1575) | GRMZM2G147780# | chr4:159564598-159569968 | Rho guanyl-nucleotide exchange factor activity |
ZYE1(n1240), ZYE2(n1027, n1263) | GRMZM2G149843# | chr4:195619489-195622261 | Vesicle-mediated transport |
BBE2(n1201), ZYE2(n1240) | GRMZM2G160463# | chr9:16727715-16731614 | Unknown |
BBE1(n1370), AMPE1(n0511, n1370), AMPE2(n1569, n1570) | GRMZM2G162356# | chr1:47900337-47901226 | Anaphase-promoting complex subunit 11||zinc ion binding |
BBE2(n1270) | GRMZM2G162755* | chr6:119876153-119878032 | Anthocyanidin 3-O-glucosyltransferase |
BBE2(n1270) | GRMZM2G162783* | chr6:119862763-119864524 | Transferase activity, transferring hexosyl groups |
ZYE2(n1229) | GRMZM2G163671# | chr4:195797470-195801122 | Maternal Effect Lethal family member||protein binding |
ZYE1(n1109, n1370, n1575), ZYE2(n1370, n1581) | GRMZM2G177203# | chr10:99379756-99383298 | DSBA-like thioredoxin domain containing protein||protein disulfide oxidoreductase activity |
BBE1(n1370), AMPE2(n1555, n1562) | GRMZM2G377215# | chr1:47504495-47507003 | hydrolase activity, hydrolyzing O-glycosyl compounds |
BBE2(n1575) | GRMZM2G421513# | chr4:158560925-158564975 | Transcribed locus, weakly similar to NP_001144758.1 |
BBE1(n1370) | GRMZM2G427418# | chr1:47597259-47600865 | Transcribed locus, moderately similar to NP_001168327.1 |
BBE1(n1370) | GRMZM5G807260* | chr1:47827840-47828946 | Unknown |
BBE1(n1370), AMPE1(n0511, n1109, n1144, n1240, n1562, n1569, n1570), AMPE2(n0511, n1109, n1111, n1144, n1240, n1370) | GRMZM5G819965* | chr1:47906016-47907112 | long cell-linked locus protein |
ZYE2(n1570) | GRMZM5G842695* | chr1:245310086-245313090 | Antiporter activity |
ZYE1(n1240), ZYE2(n1027, n1263) | GRMZM5G873295# | chr4:195545909-195548933 | Unknown |
ZYE1(n1111), GWAS(n1111) | GRMZM2G043295 | chr9:130524722-130526606 | Flavanol-3-O-glucosyltransferase |
BBE1(n1201), GWAS(n1211) | GRMZM2G059590 | chr8:153858072-153864534 | Unknown |
BBE1(n1216), BBE2(n1216), GWAS(n1216) | GRMZM2G097841 | chr10:143746242-143748475 | Anthocyanidin reductase |
BBE1(n1216), BBE2(n1216), GWAS(n1216) | GRMZM2G097854 | chr10:143738314-143740641 | Leucoanthocyanidin reductase |
BBE1(n1216), BBE2(n1216), GWAS(n1216) | GRMZM2G431504 | chr10:143752078-143754011 | Leucoanthocyanidin reductase |
BBE1(n1518), BBE2(n1518), GWAS(n1518) | GRMZM2G104710 | chr10:1919386-1920869 | O-Methyltransferase |
BBE1(n1585), BBE2(n1585), GWAS(n1585) | GRMZM2G104710 | chr10:1919386-1920869 | O-Methyltransferase |