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Table 3 Candidate genes of flavonoid biosynthetic pathway revealed by multiple evidences

From: Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis

Environment (Trait) Candidate Gene Gene interval (bp) Annotation
ZYE1(n1555, n1569), ZYE2(n1569) AC206266.3_FG001* chr9:17905187-17908271 ATPase activity
ZYE1(n1027), ZYE2(n1581) AC233883.1_FG006# chr4:193154792-193156631 Unknown
BBE2(n1201), ZYE2(n1240) GRMZM2G016930* chr9:16491882-16497920 Hydrolase activity||Serine/threonine-protein phosphatase (EC 3.1.3.16)
BBE1(n1370), AMPE1(n1370), AMPE2(n1569, n1570) GRMZM2G017536# chr1:47989435-47993634 Unknown
AMPE1(n1263) GRMZM2G029547* chr3: 215,757,514-215,764,384 3-beta-hydroxy-delta5-steroid dehydrogenase activity
ZYE2(n1570) GRMZM2G031938# chr1:245482582-245492124 Antiporter activity
BBE1(n1240) GRMZM2G032047# chr1:46124872-46126322 Cp protein
BBE1(n1370) GRMZM2G036086# chr1:47810317-47811419 Peroxisomal biogenesis factor 11 family protein
BBE2(n1173) GRMZM2G043843# chr3:230536114-230538220 Unknown
BBE2(n1575) GRMZM2G054013* chr4:158142358-158147479 Catalytic activity
ZYE2(n1555) GRMZM2G063550* chr9:17397398-17399594 Anthocyanidin 3,5-O-glucosyltransferase
BBE2(n1575) GRMZM2G066615# chr4:158338110-158345289 ATP binding
BBE2(n1201), ZYE2(n1240) GRMZM2G075582# chr9:16654134-16675731 Unknown
BBE1(n1370), AMPE2(n1555, n1562) GRMZM2G076537# chr1:47509293-47517202 Exonuclease activity binding
ZYE1(n1240), ZYE2(n1027, n1263) GRMZM2G079471# chr4:195326118-195331420 Unknown
AMPE1(n1581) GRMZM2G097812* chr9: 144,508,637-144,511,665 Unknown
BBE2(n1575) GRMZM2G110192# chr4:159724032-159726475 Unknown
BBE2(n1575) GRMZM2G110287# chr4:159754943-159757904 Catalytic activity
BBE2(n1270), AMPE1(n1201), AMPE2(n1201) GRMZM2G114801# chr6:120054604-120057326 Unknown
ZYE1(n1240), ZYE2(n1027, n1263) GRMZM2G116675# chr4:195200777-195206090 Unknown
BBE2(n1575) GRMZM2G121075# chr4:158558932-158560342 60S ribosomal protein L12
BBE1(n1370) GRMZM2G122965# chr1:47699083-47705236 Microtubule motor activity
ZYE1(n1240), ZYE2(n1027, n1263) GRMZM2G125596# chr4:195381313-195385012 regulation of transcription, DNA-dependent
BBE1(n1240) GRMZM2G129302# chr1:46863231-46865595 Glycosyltransferase 5
BBE2(n1575) GRMZM2G147780# chr4:159564598-159569968 Rho guanyl-nucleotide exchange factor activity
ZYE1(n1240), ZYE2(n1027, n1263) GRMZM2G149843# chr4:195619489-195622261 Vesicle-mediated transport
BBE2(n1201), ZYE2(n1240) GRMZM2G160463# chr9:16727715-16731614 Unknown
BBE1(n1370), AMPE1(n0511, n1370), AMPE2(n1569, n1570) GRMZM2G162356# chr1:47900337-47901226 Anaphase-promoting complex subunit 11||zinc ion binding
BBE2(n1270) GRMZM2G162755* chr6:119876153-119878032 Anthocyanidin 3-O-glucosyltransferase
BBE2(n1270) GRMZM2G162783* chr6:119862763-119864524 Transferase activity, transferring hexosyl groups
ZYE2(n1229) GRMZM2G163671# chr4:195797470-195801122 Maternal Effect Lethal family member||protein binding
ZYE1(n1109, n1370, n1575), ZYE2(n1370, n1581) GRMZM2G177203# chr10:99379756-99383298 DSBA-like thioredoxin domain containing protein||protein disulfide oxidoreductase activity
BBE1(n1370), AMPE2(n1555, n1562) GRMZM2G377215# chr1:47504495-47507003 hydrolase activity, hydrolyzing O-glycosyl compounds
BBE2(n1575) GRMZM2G421513# chr4:158560925-158564975 Transcribed locus, weakly similar to NP_001144758.1
BBE1(n1370) GRMZM2G427418# chr1:47597259-47600865 Transcribed locus, moderately similar to NP_001168327.1
BBE1(n1370) GRMZM5G807260* chr1:47827840-47828946 Unknown
BBE1(n1370), AMPE1(n0511, n1109, n1144, n1240, n1562, n1569, n1570), AMPE2(n0511, n1109, n1111, n1144, n1240, n1370) GRMZM5G819965* chr1:47906016-47907112 long cell-linked locus protein
ZYE2(n1570) GRMZM5G842695* chr1:245310086-245313090 Antiporter activity
ZYE1(n1240), ZYE2(n1027, n1263) GRMZM5G873295# chr4:195545909-195548933 Unknown
ZYE1(n1111), GWAS(n1111) GRMZM2G043295 chr9:130524722-130526606 Flavanol-3-O-glucosyltransferase
BBE1(n1201), GWAS(n1211) GRMZM2G059590 chr8:153858072-153864534 Unknown
BBE1(n1216), BBE2(n1216), GWAS(n1216) GRMZM2G097841 chr10:143746242-143748475 Anthocyanidin reductase
BBE1(n1216), BBE2(n1216), GWAS(n1216) GRMZM2G097854 chr10:143738314-143740641 Leucoanthocyanidin reductase
BBE1(n1216), BBE2(n1216), GWAS(n1216) GRMZM2G431504 chr10:143752078-143754011 Leucoanthocyanidin reductase
BBE1(n1518), BBE2(n1518), GWAS(n1518) GRMZM2G104710 chr10:1919386-1920869 O-Methyltransferase
BBE1(n1585), BBE2(n1585), GWAS(n1585) GRMZM2G104710 chr10:1919386-1920869 O-Methyltransferase
  1. * and #represent the genes from primary regulatory network and secondary regulatory network associated with the flavonoid biosynthetic pathway, respectively