Genome-wide association analysis of seedling traits in diverse Sorghum germplasm under thermal stress

BMC Plant Biology

Table 4 List of significant SNP associations, the genes tagged by significant SNPs and information from the genome wide analysis of sorghum germplasm under heat stress

Trait	SNP	FDR Adjusted p-Values*	R ² Value**	Nucleotide Variation	Distance to nearest gene (bp) ***	Nearest Gene ID
HSt_SFW	S2_73084591	0.02	14.71	C/T	(−)900	Sb02g038910
HSt_SFW	S2_73084594	0.02	14.60	C/T	(−)903	Sb02g038910
HSt_SFW	S2_73084593	0.02	−14.71	G/C	(−)902	Sb02g038910
HSt_SFW	S2_73084596	0.02	−14.71	G/A	(−)905	Sb02g038910
HSt_SFW	S6_46226536	0.02	−10.48	G/A	(+)847	Sb06g017060
HSt_SFW	S2_73084592	0.02	14.60	A/G	(−)901	Sb02g038910
HSt_SFW	S5_19670409	0.02	−15.00	G/A	-	Sb05g009740
HSt_SL	S6_45982131	0.07	8.69	A/G	(−)318	Sb06g016880
HSt_SL	S6_46194160	0.07	−7.96	G/A	(−)127	Sb06g017025
HSt_SL	S3_1638378	0.07	−24.38	T/G	302	Sb03g001820
HSt_ChlB_W⁻¹	S4_48000182	0.12	20.89	G/A	-	Sb04g020520
HSt_ChlB_W⁻¹	S4_48000349	0.13	20.39	G/A	-	Sb04g020520

*False Discovery Rate (FDR) values for the significantly associated SNP at p-value of 1E-06
**Percent trait variation explained by the associated SNPs
***Distance to the nearest annotated gene coordinates in the reference genome

ISSN: 1471-2229