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Table 4 QTLs for seed mineral concentrations and 100-seed weight in the RILs across the two locations

From: Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.)

QTLa

Location

LG

Closest marker

Position

LOD

R2 b

CI c

Parent allele d

[B]-Ps1.1

Whitlow

I

TP26529

138.6

6.7

7.0%

130.6–151.5

Kiflica

 

Spillman

I

TP27946

141.6

9.0

10.3%

130.6–151.5

Kiflica

[B]-Ps5.1

Whitlow

V

TP61763

40.2

28.3

42.0%

29.6–52.4

Kiflica

 

Spillman

V

TP61763

40.2

26.8

41.1%

29.6–52.4

Kiflica

[B]-Ps6.1

Whitlow

VI

TP65409

129.2

4.2

4.3%

127.6–131.6

Kiflica

[B]-Ps7.1

Whitlow

VII

TP63969

154.8

8.8

9.5%

144.5–164.6

Kiflica

[B]-Ps7.2

Spillman

VII

TP6905

134.8

6.7

7.5%

125.5–146.5

Kiflica

[Ca]-Ps4.1

Whitlow

IV

TP56003

6.0

9.3

7.4%

0.0–15.8

Aragorn

 

Spillman

IV

TP56003

7.0

8.4

7.4%

0.0–15.8

Aragorn

[Ca]-Ps5.1

Whitlow

V

TP61763

40.2

28.7

31.0%

29.6–50.1

Kiflica

 

Spillman

V

TP61763

40.2

25.0

27.9%

29.6–50.1

Kiflica

[Ca]-Ps7.1

Whitlow

VII

AB122_VII

150.3

14.6

12.4%

143.5–164.6

Aragorn

 

Spillman

VII

TP8547

142.7

14.5

13.3%

141.4–161.0

Aragorn

[Ca]-Ps7.2

Whitlow

VII

TP22498

199.4

3.3

2.4%

199.2–200.2

Aragorn

[Ca]-Ps7.3

Spillman

VII

TP44730

208.1

3.4

2.7%

208.1

Aragorn

[Fe]-Ps2.1

Whitlow

II

TP50728

44.3

5.0

8.7%

33.9–55.1

Aragorn

 

Spillman

II

TP13464

42.1

7.8

15.6%

30.2–51.8

Aragorn

[Fe]-Ps2.2

Whitlow

II

TP31957

120.6

3.7

7.5%

118.6–126.6

Aragorn

[Fe]-Ps5.1

Whitlow

V

TP61763

40.2

3.9

6.6%

34.1–44.8

Kiflica

 

Spillman

V

tip_SNP2_V

43.3

4.8

9.1%

43.3–46.1

Kiflica

[Fe]-Ps5.2

Spillman

V

TP40477

54.1

5.0

9.5%

51.4–58.3

Kiflica

[Fe]-Ps7.1

Whitlow

VII

TP44143

61.5

9.7

19.4%

52.6–71.5

Kiflica

 

Spillman

VII

TP47096

59.9

4.7

9.3%

57.2–67.5

Kiflica

[K]-Ps3.1

Spillman

III

TP73262

139.7

3.0

3.8%

139.7

Kiflica

[K]-Ps4.1

Whitlow

IV

TP56003

6.0

8.5

10.1%

0.0–15.8

Kiflica

 

Spillman

IV

TP56003

6.0

3.1

3.9%

6.0

Kiflica

[K]-Ps5.1

Whitlow

V

TP55189

41.5

25.6

43.0%

29.6–52.4

Kiflica

 

Spillman

V

TP8375

40.7

20.2

32.7%

31.1–52.4

Kiflica

[K]-Ps7.1

Whitlow

VII

TP31577

50.5

5.5

6.3%

44.6–58.9

Kiflica

 

Spillman

VII

TP34058

47.5

4.3

5.6%

44.6–59.9

Kiflica

[K]-Ps7.2

Whitlow

VII

TP72055

106.3

8.2

9.8%

92.5–120.1

Kiflica

[K]-Ps7.3

Spillman

VII

TP35723

154.3

7.9

10.7%

143.5–164.6

Kiflica

[Mg]-Ps3.1

Whitlow

III

TP61580

114.0

3.6

5.0%

110.0–120.2

Kiflica

[Mg]-Ps4.1

Spillman

IV

TP68325

100.3

3.6

4.8%

98.4–101.6

Kiflica

[Mg]-Ps5.1

Whitlow

V

TP61763

40.2

27.0

43.3%

29.6–52.4

Kiflica

 

Spillman

V

TP61763

40.2

20.1

35.2%

29.6–50.1

Kiflica

[Mg]-Ps5.2

Whitlow

V

TP41157

116.7

3.2

4.7%

115.7–118.8

Kiflica

[Mn]-Ps1.1

Whitlow

I

TP13780

32.3

3.2

3.6%

32.3–35.2

Aragorn

 

Spillman

I

TP16170

32.7

3.1

3.7%

32.7

Aragorn

[Mn]-Ps2.1

Whitlow

II

TP71677

77.1

3.2

3.9%

75.5–78.1

Kiflica

 

Spillman

II

F3586_SNP1_II

74.1

8.4

11.4%

61.9–84.8

Kiflica

[Mn]-Ps4.1

Whitlow

IV

TP28107

29.0

7.1

12.3%

21.0–43.9

Aragorn

 

Spillman

IV

TP28107

31.0

5.9

9.7%

14.9–36.0

Aragorn

[Mn]-Ps5.1

Whitlow

V

tip_SNP2_V

44.3

19.4

29.9%

32.5–52.4

Kiflica

 

Spillman

V

TP58793

40.5

19.1

29.3%

29.6–50.1

Kiflica

[Mn]-Ps7.1

Whitlow

VII

TP35001

161.0

12.5

18.1%

151.9–173.8

Aragorn

 

Spillman

VII

TP35001

160.0

3.0

3.7%

160.0

Aragorn

[Mo]-Ps5.1

Whitlow

V

TP42330

41.2

16.5

34.2%

31.1–52.4

Kiflica

 

Spillman

V

TP42330

41.2

16.5

33.0%

31.1–52.4

Kiflica

[P]-Ps3.1

Whitlow

III

TP75231

121.2

7.3

16.9%

108.0–133.2

Aragorn

[P]-Ps3.2

Whitlow

III

TP32958

191.3

4.4

8.6%

183.5–194.3

Kiflica

[P]-Ps5.1

Whitlow

V

TP61763

40.2

7.5

15.0%

29.6–50.1

Kiflica

 

Spillman

V

TP61763

40.2

8.0

14.9%

30.6–50.1

Kiflica

[P]-Ps7.1

Whitlow

VII

TP60315

45.0

3.1

5.9%

44.6–45.0

Kiflica

[P]-Ps7.2

Spillman

VII

TP40383

90.5

4.4

7.8%

81.6–93.5

Aragorn

[S]-Ps3.1

Whitlow

III

TP47722

67.2

8.0

12.6%

57.2–76.2

Kiflica

 

Spillman

III

TP74059

65.5

8.6

15.1%

54.5–77.2

Kiflica

[S]-Ps5.1

Spillman

V

TP61763

40.2

8.5

14.3%

31.1–52.4

Kiflica

[S]-Ps5.2

Whitlow

V

TP27214

53.4

10.0

16.3%

43.3–77.3

Kiflica

[S]-Ps6.1

Whitlow

VI

TP41250

147.7

3.7

5.6%

147.7–148.7

Kiflica

 

Spillman

VI

TP51502

151.0

4.6

7.6%

140.9–167.1

Kiflica

[S]-Ps7.1

Whitlow

VII

TP44143

65.5

4.8

9.4%

51.6–71.5

Kiflica

[Zn]-Ps2.1

Whitlow

II

TP31957

125.6

4.5

11.7%

115.9–135.6

Aragorn

[Zn]-Ps3.1

Spillman

III

TP2567

102.5

7.6

12.7%

92.4–112.0

Kiflica

[Zn]-Ps5.1

Whitlow

V

TP61763

40.2

5.0

9.1%

35.7–42.5

Kiflica

 

Spillman

V

TP61763

40.2

6.4

10.4%

29.6–43.3

Kiflica

[Zn]-Ps7.1

Whitlow

VII

TP44143

60.5

7.7

14.7%

55.6–71.5

Kiflica

[Zn]-Ps7.2

Spillman

VII

TP60315

45.0

3.6

5.6%

44.6–46.0

Kiflica

SW-Ps3.1

Whitlow

III

AD73_III

147.8

4.6

9.1%

141.7–165.6

Aragorn

 

Spillman

III

AD73_III

147.8

3.1

5.1%

145.9–148.8

Aragorn

SW-Ps5.1

Whitlow

V

TP42330

41.2

10.8

20.3%

31.1–52.4

Aragorn

 

Spillman

V

TP42330

41.2

13.5

23.2%

31.1–52.4

Aragorn

SW-Ps5.2

Spillman

V

TP59611

103.8

3.0

5.0%

103.8

Aragorn

SW-Ps6.1

Whitlow

VI

TP45228

95.7

6.2

10.8%

84.7–106.9

Kiflica

SW-Ps6.2

Spillman

VI

TP13944

101.9

5.1

7.5%

101.9–120.0

Kiflica

SW-Ps7.1

Whitlow

VII

TP65523

81.6

5.2

11.9%

74.6–97.5

Aragorn

 

Spillman

VII

TP36649

87.7

6.1

9.4%

76.6–97.5

Aragorn

  1. aQTL names represent the traits, the initial of Pisum sativum, linkage group # and order of the QTLs
  2. bR2 is percentage of phenotypic variance explained by the QTL
  3. cCI represents 95% confidence interval for the QTL location
  4. dParental allele contributing to the trait