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Table 3 DEGs with high FRPM values in TW-1 and TW-1-M

From: Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

Gene

Gene_annotation

TW-1-M

TW-1

Regulation

gene13922

1-aminocyclopropane-1-carboxylate oxidase 1

1160.28

240.427

up

gene20644

1-aminocyclopropane-1-carboxylate oxidase 1-like

326.818

56.2496

up

gene20259

1-aminocyclopropane-1-carboxylate oxidase-like

446.817

204.574

up

gene2676

2-hydroxyisoflavanone dehydratase

148.017

308.306

down

gene34732

ABC transporter F family member 1, transcript variant X1

57.2258

240.966

down

gene37621

abscisic acid receptor PYL12-like

656.208

1350.98

down

gene12186

acyl-CoA oxidase

55.391

117.437

down

gene58187

ascorbate peroxidase 1, cytosolic

270.578

105.846

up

gene29377

auxin down-regulated protein

2132.82

759.573

up

gene37700

auxin-repressed 12.5 kDa protein-like, transcript variant X1

116.909

278.5

down

gene8950

catalase

62

192.975

down

gene14347

catalase

90.0193

255.074

down

gene7840

dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A

236.779

110.339

up

gene54561

dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A

223.879

104.715

up

gene27626

embryonic protein DC-8-like

44.7358

269.219

down

gene31117

endo-1,3-beta-glucanase

59.2309

540.571

down

gene37696

ethylene-responsive transcription factor 12

212.678

879.038

down

gene42281

ethylene-responsive transcription factor 12-like

374.843

794.408

down

gene15603

ethylene-responsive transcription factor ERF110-like

155.112

347.213

down

gene49187

ethylene-responsive transcription factor RAP2-1-like

56.2688

135.164

down

gene24409

ethylene-responsive transcription factor RAP2-3-like

668.14

1576.5

down

gene42969

ethylene-responsive transcription factor RAP2-3-like

1167.92

3510.15

down

gene35673

F-box protein SKP2B, transcript variant X1

77.6451

172.134

down

gene55554

flavonol synthase/flavanone 3-hydroxylase-like

84.0581

183.276

down

gene8335

galactinol synthase 1

500.381

1388.7

down

gene55115

galactinol synthase 2

23.0731

379.858

down

gene15912

galactinol--sucrose galactosyltransferase, transcript variant X2

142.3

396.706

down

gene11959

galactinol--sucrose galactosyltransferase-like

90.2918

344.135

down

gene42444

gibberellin 2-beta-dioxygenase-like

240.649

96.8673

up

gene52252

gibberellin-regulated protein 4-like

6582.18

2751.57

up

gene56620

glutathione S-transferase GST 18

74.9299

251.187

down

gene18908

glutathione S-transferase GST 7

223.983

96.0631

up

gene27455

glutathione S-transferase L3, transcript variant X1

158.692

512.444

down

gene44166

glutathione transferase

132.399

308.722

down

gene21642

homeodomain-leucine zipper protein 56, transcript variant X1

189.04

91.3283

up

gene46225

isoflavone 7-O-glucosyltransferase 1-like

30.5776

116.967

down

gene8972

L-ascorbate oxidase homolog

139.264

63.2909

up

gene27264

late embryogenesis abundant protein D-34-like

300.459

1242.39

down

gene35300

late embryogenesis abundant protein-like

328.87

2372.13

down

gene37327

late embryogenesis abundant protein-like

52.5198

587.359

down

gene30694

MYB transcription factor MYB50

142.722

41.363

up

gene9199

MYB transcription factor MYB68

52.8014

152.65

down

gene46117

peroxidase 12-like

192.985

80.4326

up

gene24224

peroxidase 15-like, transcript variant X1

179.556

36.2356

up

gene16824

probable aldo-keto reductase 2

42.1291

513.099

down

gene47762

probable galactinol--sucrose galactosyltransferase 6, transcript variant X1

161.157

60.6944

up

gene44169

probable glutathione S-transferase parC

86.7473

287.001

down

gene8658

putative F-box protein PP2-B12

77.8839

458.651

down

gene11905

RING-H2 finger protein ATL48

269.579

746.254

down

gene55008

stachyose synthase

57.1634

224.996

down

gene27675

transcription elongation factor 1 homolog

129.432

322.136

down

gene12634

transcription factor HEC1-like

80.3

168.632

down

gene30355

UDP-glucose 4-epimerase GEPI48-like, transcript variant X1

48.3533

148.505

down

gene52306

UDP-glucose 6-dehydrogenase 1

172.346

65.6367

up

gene22682

UDP-glucose dehydrogenase, transcript variant X1

181.645

84.1597

up

gene54704

UDP-glycosyltransferase 73C2-like

392.204

114.358

up

gene45

zinc finger CCCH domain-containing protein 20

97.306

265.596

down