Skip to main content

Table 1 Library read analyses statistics

From: Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants

  Total raw reads Total clean reads Valid ratio Gene mapped reads Gene mapped ratio Gene unique mapped reads Gene unique mapped ratio Non-splice reads ratio Splice reads ratio Total reads mapped expressed genes
TW-1-1-1 54846496 53989364 98.44% 47980066 88.87% 40357180 84.11% 55.68% 28.44% 31987
TW-1-1-2 61454226 60684460 98.75% 54536489 89.87% 45869439 84.11% 55.98% 28.13% 32935
TW-1-1-3 46813834 45625642 97.46% 40571957 88.92% 32364788 79.77% 53.88% 25.89% 32613
TW-1-2-1 42866726 41833914 97.59% 36435236 87.09% 29690167 81.48% 54.55% 26.93% 32799
TW-1-2-2 40017620 39514560 98.74% 35947369 90.97% 29879201 83.12% 53.91% 29.21% 33015
TW-1-2-3 44069752 43420982 98.53% 39540531 91.06% 31212328 78.94% 51.35% 27.59% 33479
TW-1-3-1 43704478 42954548 98.28% 38687168 90.07% 31702965 81.95% 53.53% 28.42% 30656
TW-1-3-2 49604414 48907380 98.59% 44561575 91.11% 36044941 80.89% 49.61% 31.28% 33848
TW-1-3-3 44165126 41611906 94.22% 35653176 85.68% 28482253 79.89% 49.44% 30.45% 34820
TW-1-M-1-1 54461020 53698832 98.60% 49119558 91.47% 40110386 81.66% 55.04% 26.61% 32330
TW-1-M-1-2 46244798 45634652 98.68% 41698366 91.37% 35054413 84.07% 55.21% 28.85% 31706
TW-1-M-1-3 53416206 52732078 98.72% 48443543 91.87% 39005105 80.52% 51.91% 28.61% 32999
TW-1-M-2-1 51359166 50426196 98.18% 46437117 92.09% 38158539 82.17% 51.46% 30.71% 33151
TW-1-M-2-2 62294034 61477542 98.69% 56456407 91.83% 46353592 82.11% 50.80% 31.31% 33871
TW-1-M-2-3 43755042 42995004 98.26% 39690338 92.31% 32335903 81.47% 50.00% 31.47% 32406
TW-1-M-3-1 62931516 62062754 98.62% 56549018 91.12% 45018182 79.61% 50.79% 28.82% 34135
TW-1-M-3-2 39450214 37671510 95.49% 32733417 86.89% 25369978 77.50% 49.32% 28.18% 34345
TW-1-M-3-3 46654868 45873652 98.33% 42141833 91.87% 35304742 83.78% 52.61% 31.16% 33738