Table 4 Comparison of annotated genes involved in fibrous root formation between Ib and It using FPKM values
Annotation | Ib | It | Ratio |
|---|---|---|---|
Cysteine protease | 44.9 | 1709.6 | 38.1 |
Cysteine proteinase | 145.4 | 744.9 | 5.1 |
Osmotin-like protein | 20.4 | 787.7 | 38.6 |
Succinate dehydrogenase | 41.9 | 49.0 | 1.2 |
Caffeoyl-CoA O-methyltransferase (CoMT) | 410.7 | 975.2 | 2.4 |
Phenylalanine ammonia-lyase (PAL) | 87.3 | 443.0 | 5.1 |
Peroxidase | 105.5 | 689.3 | 6.5 |
4-coumarate--CoA ligase (4-CL) | 30.3 | 198.7 | 6.6 |
Cinnamyl alcoholdehydrogenase (CAD) | 67.7 | 762.9 | 11.3 |
5-enolpyruvylshikimate-3-phosphate synthase (EPSP) | 29.1 | 144.3 | 5.0 |
Ethylene responsive transcription factor (ERF) | 77.9 | 211.8 | 2.7 |