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Table 1 Summary of significantly enriched (P < 0.05) pathway terms associated with differentially expressed genes (DEGs)

From: Combined transcriptome and metabolome analyses to understand the dynamic responses of rice plants to attack by the rice stem borer Chilo suppressalis (Lepidoptera: Crambidae)

Classa

Pathway ID

Pathway term

Number of DEGs

P value*

I

PATH:01110

Biosynthesis of secondary metabolites

136

2.03E-05

 

PATH:00940

Phenylpropanoid biosynthesis

37

4.43E-05

 

PATH:00910

Nitrogen metabolism

13

2.65E-04

 

PATH:00592

alpha-linolenic acid metabolism

13

3.56E-04

 

PATH:04075

Plant hormone signal transduction

33

3.64E-04

 

PATH:00062

Fatty acid elongation

11

1.09E-03

 

PATH:00945

Stilbenoid, diarylheptanoid, and gingerol biosynthesis

19

1.32E-03

 

PATH:00360

Phenylalanine metabolism

26

1.50E-03

 

PATH:01100

Metabolic pathways

180

1.98E-03

 

PATH:00941

Flavonoid biosynthesis

15

2.68E-03

 

PATH:04626

Plant-pathogen interaction

40

3.24E-03

 

PATH:00280

Valine, leucine and isoleucine degradation

10

3.70E-03

 

PATH:00052

Galactose metabolism

11

4.30E-03

 

PATH:00903

Limonene and pinene degradation

15

5.76E-03

 

PATH:00480

Glutathione metabolism

17

8.59E-03

 

PATH:00561

Glycerolipid metabolism

11

8.75E-03

 

PATH:00410

beta-alanine metabolism

7

2.00E-02

 

PATH:00900

Terpenoid backbone biosynthesis

9

2.43E-02

 

PATH:00760

Nicotinate and nicotinamide metabolism

4

4.37E-02

II

PATH:03008

Ribosome biogenesis in eukaryotes

31

2.77E-14

 

PATH:03010

Ribosome

41

1.40E-08

 

PATH:00196

Photosynthesis - antenna proteins

10

1.20E-07

 

PATH:00230

Purine metabolism

19

1.24E-03

 

PATH:00240

Pyrimidine metabolism

16

2.67E-03

 

PATH:03013

RNA transport

19

3.63E-03

 

PATH:03018

RNA degradation

13

8.68E-03

 

PATH:03410

Base excision repair

7

1.31E-02

 

PATH:03450

Non-homologous end-joining

3

1.74E-02

 

PATH:03440

Homologous recombination

7

3.87E-02

 

PATH:03020

RNA polymerase

6

4.08E-02

III

PATH:01110

Biosynthesis of secondary metabolites

89

2.05E-13

 

PATH:00940

Phenylpropanoid biosynthesis

26

2.69E-07

 

PATH:00010

Glycolysis/Gluconeogenesis

17

5.30E-06

 

PATH:00360

Phenylalanine metabolism

20

6.99E-06

 

PATH:00520

Amino sugar and nucleotide sugar metabolism

18

1.12E-05

 

PATH:00966

Glucosinolate biosynthesis

4

7.22E-04

 

PATH:00380

Tryptophan metabolism

7

1.19E-03

 

PATH:01100

Metabolic pathways

89

2.00E-03

 

PATH:00909

Sesquiterpenoid and triterpenoid biosynthesis

4

4.89E-03

 

PATH:00051

Fructose and mannose metabolism

7

8.44E-03

 

PATH:00904

Diterpenoid biosynthesis

5

8.62E-03

 

PATH:00052

Galactose metabolism

6

1.54E-02

 

PATH:00030

Pentose phosphate pathway

5

3.29E-02

 

PATH:00591

Linoleic acid metabolism

3

4.14E-02

 

PATH:00944

Flavone and flavonol biosynthesis

3

4.62E-02

IV

PATH:00500

Starch and sucrose metabolism

6

2.24E-03

 

PATH:00196

Photosynthesis - antenna proteins

2

4.87E-03

 

PATH:00944

Flavone and flavonol biosynthesis

2

1.23E-02

V

PATH:01110

Biosynthesis of secondary metabolites

17

2.24E-03

 

PATH:01100

Metabolic pathways

22

4.03E-03

 

PATH:00940

Phenylpropanoid biosynthesis

6

6.04E-03

 

PATH:00500

Starch and sucrose metabolism

5

9.00E-03

 

PATH:00944

Flavone and flavonol biosynthesis

2

1.10E-02

 

PATH:00902

Monoterpenoid biosynthesis

1

2.00E-02

 

PATH:00941

Flavonoid biosynthesis

3

2.31E-02

 

PATH:00460

Cyanoamino acid metabolism

2

3.62E-02

 

PATH:01110

Biosynthesis of secondary metabolites

17

2.24E-03

  1. aClass numbers refer to Fig. 3
  2. *P values for modified Fisher’s exact test
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BMC Plant Biology

ISSN: 1471-2229

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