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Table 3 Sesame DEGs homologous to Arabidopsis male-sterility/reproduction genes

From: Comparative transcriptome profiling of the fertile and sterile flower buds of a dominant genic male sterile line in sesame (Sesamum indicum L.)

Query IDa log2FC Subject ID E-value Score Symbol Description
Down-regulated, homologs of MS gene (cloned)b
SIN_1005144 −10.88 AT4G39910 1E-22 90.1 ATUBP3 ubiquitin-specific protease 3 (UBP3)
SIN_1012023 −8.47 AT1G69940 2E-140 407 AtPPME1 PPME1
SIN_1020647 −4.94 AT4G02780 0 634 ABC33, CPS1, GA1 GA REQUIRING 1 (GA1)
SIN_1015972 −4.78 AT1G65470 2E-79 264 FAS1, NFB2 FASCIATA 1 (FAS1)
SIN_1008904 −2.36 AT1G77850 3E-139 418 ARF17 auxin response factor 17 (ARF17)
SIN_1001388 −2.07 AT4G21330 2E-36 129 DYT1 DYSFUNCTIONAL TAPETUM 1 (DYT1)
SIN_1013503 −1.94 AT3G07970 4E-103 315 QRT2 QUARTET 2 (QRT2)
SIN_1007044 −1.67 AT5G54680 6E-61 194 bHLH105, ILR3 iaa-leucine resistant3 (ILR3)
SIN_1020616 −1.61 AT2G24450 1E-41 146 FLA3 FASCICLIN-like arabinogalactan protein 3 (FLA3)
SIN_1014349 −1.61 AT3G13170 1E-172 488 AtSPO11-1, AtTAF6 ATSPO11-1
SIN_1025211 −1.52 AT5G22130 6E-110 329 PNT1 PEANUT 1 (PNT1)
SIN_1015023 −1.49 AT3G54140 0 768 ATPTR1, PTR1 peptide transporter 1 (PTR1)
SIN_1008202 −1.36 AT4G39400 1.6 26.2 BIN1, BRI1, DWF2 BRASSINOSTEROID INSENSITIVE 1 (BRI1)
SIN_1008272 −1.30 AT3G48750 2E-91 280 CDC2, CDK2 cell division control 2 (CDC2)
SIN_1005880 −1.17 AT3G52590 5E-41 134 ERD16, HAP4, UBQ1 ubiquitin extension protein 1 (UBQ1)
SIN_1013864 −1.14 AT4G23850 0 1022 LACS4 long-chain acyl-CoA synthetase 4 (LACS4)
SIN_1004796 −1.01 AT1G50500 0 875 HIT1, VPS53 HEAT-INTOLERANT 1 (HIT1)
Upregulated, homologs of MS gene (cloned)
SIN_1004507 1.00 AT4G34850 0 624 LAP5 LESS ADHESIVE POLLEN 5 (LAP5)
SIN_1015330 1.27 AT3G23920 0 852 BAM1, BMY7 beta-amylase 1 (BAM1)
SIN_1003190 1.43 AT1G02205 0 711 CER1 ECERIFERUM 1 (CER1)
SIN_1011100 1.84 AT2G38110 0 735 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (GPAT6)
SIN_1006818 1.97 AT4G20050 0 558 QRT3 QUARTET 3 (QRT3)
SIN_1005329 2.22 AT3G23240 3E-31 114 ATERF1, ERF1 ethylene response factor 1 (ERF1)
SIN_1009935 2.28 AT3G61230 6E-104 303 PLIM2c GATA type zinc finger transcription factor
SIN_1004029 2.53 AT5G14380 0.015 33.5 AGP6 arabinogalactan protein 6 (AGP6)
Downregulated, homologs of MR gene with mutant evidence
SIN_1026151 −1.02 AT2G14760 2E-68 221   basic helix-loop-helix (bHLH) DNA-binding protein
SIN_1008063 −1.01 AT1G26610 4E-22 99.8   C2H2-like zinc finger protein
Downregulated, homologs of MR gene with GO evidence
SIN_1006103 −2.68 AT5G57880 1E-24 101 MPS1, PRD2 MULTIPOLAR SPINDLE 1 (MPS1)
SIN_1006609 −2.46 AT3G47870 1E-37 137 LBD27, SCP LOB domain-containing protein 27 (LBD27)
SIN_1017022 −1.69 AT1G78130 0 665 UNE2 unfertilized embryo sac 2 (UNE2)
SIN_1014074 −1.63 AT1G01690 2E-48 170 ATPRD3, PRD3 putative recombination initiation defects 3 (PRD3)
SIN_1017944 −1.59 AT1G64110 0 1150   P-loop containing nucleoside triphosphate hydrolases
SIN_1022121 −1.51 AT4G24972 2E-12 61.6 TPD1 TAPETUM DETERMINANT 1 (TPD1)
SIN_1015497 −1.48 AT1G63990 7E-117 345 SPO11-2 sporulation 11–2 (SPO11-2)
SIN_1007667 −1.43 AT4G29170 3E-119 344 ATMND1 ATMND1
SIN_1005858 −1.36 AT5G24330 3E-127 367 ATXR6, SDG34 Arabidopsis Trithorax-Related Protein 6 (ATXR6)
SIN_1015063 −1.22 AT3G44540 1E-153 449 FAR4 fatty acid reductase 4 (FAR4)
SIN_1001377 −1.12 AT1G11330 0 611   S-locus lectin protein kinase family protein
SIN_1009130 −1.06 AT4G25590 8E-89 258 ADF7 actin depolymerizing factor 7 (ADF7)
SIN_1016644 −1.02 AT1G25450 1E-157 461 CER60, KCS5 3-ketoacyl-CoA synthase 5 (KCS5)
Upregulated, homologs of MR gene with GO evidence
SIN_1014884 1.00 AT4G34050 3E-163 456 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1)
SIN_1002228 1.03 AT3G28470 2E-39 144 TDF1, ATMYB35 Defective In Meristem Development And Function 1 (TDF1)
SIN_1026357 1.30 AT5G23530 4E-101 305 AtCXE18, CXE18 carboxyesterase 18 (CXE18)
SIN_1012979 1.41 AT5G03700 5E-155 454   D-mannose binding lectin protein
SIN_1002445 1.57 AT2G37040 0 1104 ATPAL1, PAL1 PHE ammonia lyase 1 (PAL1)
SIN_1019202 1.66 AT3G59530 0 608 LAP3 Calcium-dependent phosphotriesterase
SIN_1019338 2.29 AT3G17220 3E-08 50.4 ATPMEI2, PMEI2 pectin methylesterase inhibitor 2 (PMEI2)
SIN_1007695 7.68 AT2G19070 0 540 SHT spermidine hydroxycinnamoyl transferase (SHT)
SIN_1005049 7.69 AT4G27290 0 873   S-locus lectin protein kinase family protein
  1. aThe homologue search using Blast; barabidopsis male-sterility/male-reproduction related genes in PMRD (Plant Male Reproduction Database, http://www.pmrd.org/)