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Table 3 Sesame DEGs homologous to Arabidopsis male-sterility/reproduction genes

From: Comparative transcriptome profiling of the fertile and sterile flower buds of a dominant genic male sterile line in sesame (Sesamum indicum L.)

Query IDa

log2FC

Subject ID

E-value

Score

Symbol

Description

Down-regulated, homologs of MS gene (cloned)b

SIN_1005144

−10.88

AT4G39910

1E-22

90.1

ATUBP3

ubiquitin-specific protease 3 (UBP3)

SIN_1012023

−8.47

AT1G69940

2E-140

407

AtPPME1

PPME1

SIN_1020647

−4.94

AT4G02780

0

634

ABC33, CPS1, GA1

GA REQUIRING 1 (GA1)

SIN_1015972

−4.78

AT1G65470

2E-79

264

FAS1, NFB2

FASCIATA 1 (FAS1)

SIN_1008904

−2.36

AT1G77850

3E-139

418

ARF17

auxin response factor 17 (ARF17)

SIN_1001388

−2.07

AT4G21330

2E-36

129

DYT1

DYSFUNCTIONAL TAPETUM 1 (DYT1)

SIN_1013503

−1.94

AT3G07970

4E-103

315

QRT2

QUARTET 2 (QRT2)

SIN_1007044

−1.67

AT5G54680

6E-61

194

bHLH105, ILR3

iaa-leucine resistant3 (ILR3)

SIN_1020616

−1.61

AT2G24450

1E-41

146

FLA3

FASCICLIN-like arabinogalactan protein 3 (FLA3)

SIN_1014349

−1.61

AT3G13170

1E-172

488

AtSPO11-1, AtTAF6

ATSPO11-1

SIN_1025211

−1.52

AT5G22130

6E-110

329

PNT1

PEANUT 1 (PNT1)

SIN_1015023

−1.49

AT3G54140

0

768

ATPTR1, PTR1

peptide transporter 1 (PTR1)

SIN_1008202

−1.36

AT4G39400

1.6

26.2

BIN1, BRI1, DWF2

BRASSINOSTEROID INSENSITIVE 1 (BRI1)

SIN_1008272

−1.30

AT3G48750

2E-91

280

CDC2, CDK2

cell division control 2 (CDC2)

SIN_1005880

−1.17

AT3G52590

5E-41

134

ERD16, HAP4, UBQ1

ubiquitin extension protein 1 (UBQ1)

SIN_1013864

−1.14

AT4G23850

0

1022

LACS4

long-chain acyl-CoA synthetase 4 (LACS4)

SIN_1004796

−1.01

AT1G50500

0

875

HIT1, VPS53

HEAT-INTOLERANT 1 (HIT1)

Upregulated, homologs of MS gene (cloned)

SIN_1004507

1.00

AT4G34850

0

624

LAP5

LESS ADHESIVE POLLEN 5 (LAP5)

SIN_1015330

1.27

AT3G23920

0

852

BAM1, BMY7

beta-amylase 1 (BAM1)

SIN_1003190

1.43

AT1G02205

0

711

CER1

ECERIFERUM 1 (CER1)

SIN_1011100

1.84

AT2G38110

0

735

ATGPAT6, GPAT6

glycerol-3-phosphate acyltransferase 6 (GPAT6)

SIN_1006818

1.97

AT4G20050

0

558

QRT3

QUARTET 3 (QRT3)

SIN_1005329

2.22

AT3G23240

3E-31

114

ATERF1, ERF1

ethylene response factor 1 (ERF1)

SIN_1009935

2.28

AT3G61230

6E-104

303

PLIM2c

GATA type zinc finger transcription factor

SIN_1004029

2.53

AT5G14380

0.015

33.5

AGP6

arabinogalactan protein 6 (AGP6)

Downregulated, homologs of MR gene with mutant evidence

SIN_1026151

−1.02

AT2G14760

2E-68

221

 

basic helix-loop-helix (bHLH) DNA-binding protein

SIN_1008063

−1.01

AT1G26610

4E-22

99.8

 

C2H2-like zinc finger protein

Downregulated, homologs of MR gene with GO evidence

SIN_1006103

−2.68

AT5G57880

1E-24

101

MPS1, PRD2

MULTIPOLAR SPINDLE 1 (MPS1)

SIN_1006609

−2.46

AT3G47870

1E-37

137

LBD27, SCP

LOB domain-containing protein 27 (LBD27)

SIN_1017022

−1.69

AT1G78130

0

665

UNE2

unfertilized embryo sac 2 (UNE2)

SIN_1014074

−1.63

AT1G01690

2E-48

170

ATPRD3, PRD3

putative recombination initiation defects 3 (PRD3)

SIN_1017944

−1.59

AT1G64110

0

1150

 

P-loop containing nucleoside triphosphate hydrolases

SIN_1022121

−1.51

AT4G24972

2E-12

61.6

TPD1

TAPETUM DETERMINANT 1 (TPD1)

SIN_1015497

−1.48

AT1G63990

7E-117

345

SPO11-2

sporulation 11–2 (SPO11-2)

SIN_1007667

−1.43

AT4G29170

3E-119

344

ATMND1

ATMND1

SIN_1005858

−1.36

AT5G24330

3E-127

367

ATXR6, SDG34

Arabidopsis Trithorax-Related Protein 6 (ATXR6)

SIN_1015063

−1.22

AT3G44540

1E-153

449

FAR4

fatty acid reductase 4 (FAR4)

SIN_1001377

−1.12

AT1G11330

0

611

 

S-locus lectin protein kinase family protein

SIN_1009130

−1.06

AT4G25590

8E-89

258

ADF7

actin depolymerizing factor 7 (ADF7)

SIN_1016644

−1.02

AT1G25450

1E-157

461

CER60, KCS5

3-ketoacyl-CoA synthase 5 (KCS5)

Upregulated, homologs of MR gene with GO evidence

SIN_1014884

1.00

AT4G34050

3E-163

456

CCoAOMT1

caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1)

SIN_1002228

1.03

AT3G28470

2E-39

144

TDF1, ATMYB35

Defective In Meristem Development And Function 1 (TDF1)

SIN_1026357

1.30

AT5G23530

4E-101

305

AtCXE18, CXE18

carboxyesterase 18 (CXE18)

SIN_1012979

1.41

AT5G03700

5E-155

454

 

D-mannose binding lectin protein

SIN_1002445

1.57

AT2G37040

0

1104

ATPAL1, PAL1

PHE ammonia lyase 1 (PAL1)

SIN_1019202

1.66

AT3G59530

0

608

LAP3

Calcium-dependent phosphotriesterase

SIN_1019338

2.29

AT3G17220

3E-08

50.4

ATPMEI2, PMEI2

pectin methylesterase inhibitor 2 (PMEI2)

SIN_1007695

7.68

AT2G19070

0

540

SHT

spermidine hydroxycinnamoyl transferase (SHT)

SIN_1005049

7.69

AT4G27290

0

873

 

S-locus lectin protein kinase family protein

  1. aThe homologue search using Blast; barabidopsis male-sterility/male-reproduction related genes in PMRD (Plant Male Reproduction Database, http://www.pmrd.org/)