Table 4 Non-syn SNPs in the homologs between pepper and tomato genes that are reported at differentially expressed genes (DEG)
A.th. Gene | Description | PLAZAa tomato Ortholog | Blast top hit btw. tomato and pepper | SNP context |
|---|---|---|---|---|
S response | ||||
AT5G59120 | subtilase 4.13 | SL09G009750 | CA09g00620 | TAGACCATACAAGCTAGTGC(C/T)CGGGACGGGTATCCCACTGA |
| Â | Â | SL01G091930 | CA01g19460 | TACTTTCAATCTTCTTTTAG(T/C)TGTTGCAGGCAAACCAATAA |
| Â | Â | Â | Â | ATTAGTACCTTGAACTCTCT(T/C)GAGTATCTGCGCTCTTGGCT |
AT5G56870 | beta-galactosidase 4 | SL03G019890 | CA03g23820 | CTTGTCATTTTTATCATCCA(A/T)ATTGGCAAGAAAGGCAGCAC |
| Â | Â | Â | Â | ACAATTTCATGTTAAAGTTT(A/G)CGCTGGACATTTCTAACTCA |
| Â | Â | SL07G042220 | CA02g28670 | CAGAAGATTGACCCCTTCCT(T/A)GAATAATAGTGTCATCAATC |
| Â | Â | Â | Â | ATTGCATGACAATTCCATTG(C/T)TTTGTTCTCATAAGCACTTC |
| Â | Â | SL09G092160 | CA03g17620 | ACTCGCCGGCGATGATCGTC(A/C)AGTGTATACTTAACGCCGTT |
| Â | Â | Â | Â | CTTTGCGAACTTGACAATAT(C/A)ATATCTTCCTTCAAAGTTAT |
| Â | Â | Â | Â | TTTCAGCAGCCCATTTCATA(T/C)ATATCTTCCCCTTGGGACCG |
| Â | Â | Â | Â | ATCATAATCATAGCTAGTGA(T/G)TTGAGCTGGGCCTCCAGCAG |
| Â | Â | Â | Â | ATAACTGACCTCTTGTTTTG(G/T)TCCCAGTTTAATATACTGAG |
| Â | Â | Â | Â | TTTAATTGAAGTTTGTGCGG(T/C)CACCTGTTTAAGGAATGGAA |
| Â | Â | Â | Â | GATTGTGAAATACTTTCGAG(A/C)TTGCTTTTAGTGCTTAATTG |
| Â | Â | Â | Â | CAAAATCGCGCATGCTATCA(A/C)TATCAATCGTTGGACTAACA |
| Â | Â | Â | Â | TGATCCATTTGCCTTTCACA(C/A)TACCTTCATTTGCAACAGAC |
| Â | Â | Â | Â | ATCCAGGGCAACGGGATCTG(T/C)TCTGCCTGGGGCATCAAACT |
| Â | Â | Â | Â | TGACCTTTTCCCATGCTACT(T/A)AAATCCAGGGCAACGGGATC |
| Â | Â | Â | Â | TGCAACCAAAGTCCAATATC(T/A)TCCTATATGGTGACCATTAA |
| Â | Â | Â | Â | AGTTTGTCCTACATTTATCA(A/G)AGCCGTAAGCACCACGATAA |
| Â | Â | Â | Â | TGCTTTATCCGTCAGAGAAA(T/G)TTTCCCGTCGAACTCTGAGT |
| Â | Â | Â | Â | CTTGACAATGTGTCGACATG(C/G)ATCTCCAACTACGGCATTGG |
AT1G53350 | Disease resistance protein (CC-NBS-LRR class) family | SL12G096920 | CA12g19770 | AACAGATTAACAAGATGAGG(A/G)ATGACGAGCTCGTTAAGGCA |
| Â | Â | Â | Â | GCGTCCTGGCTTTAAGTTAT(G/T)ATGATTTACCGTATCAGCTT |
| Â | Â | Â | Â | GTGTTTTCTGTACTTGGGCA(G/A)CTTTCCGGAGGGTGAAAAGA |
| Â | Â | Â | Â | GGGCTGCTGAAGAAATTATA(G/C)CATTGGAAGGTAACCAAGGA |
| Â | Â | Â | Â | ATGGTTCAGGTGCAACTAGA(C/G)GAAACAATCGGAAGGATCAA |
| Â | Â | Â | Â | CCTGGAGGGTCGAGACAGGC(A/G)CCATGCCTAATCTAGTTCAT |
| Â | Â | Â | Â | CCAAGATTAAATCCAGAATG(T/A)TATTTTCAGGTACTCAGTCA |
AT5G20080 | FAD/NAD(P)-binding oxidoreductase | SL05G018520 | CA10g18310 | TAAAATAAATGGGGCTGACG(G/A)CCAATATCGTTCATCACCCA |
| Â | Â | Â | Â | ATACGAGCAAGAGCAATATC(T/C)ATATCATTCTTAAGTCGGGT |
AT3G61220 | NAD(P)-binding Rossmann-fold superfamily protein | SL01G094220 | CA08g06650 | ACAATGCAGGAGTTGGTGGA(G/T)TCACTGCAGATGCTGATGCC |
R response | ||||
AT2G38540 | lipid transfer protein 1 | SL10G075100 | CA10g08470 | AGGGAGAGCAGCAGCTTTGC(C/G)CATGTCAATGCCCTTGATTG |
| Â | Â | SL07G049280 | CA07g10490 | AATTACTCCTACAATGTAAT(C/T)TGTAACACTTTTAAGTGTTT |
| Â | Â | Â | Â | ATTCTTTAGAGCCCACTCTT(T/C)TCTCAAGGAAGCAAATTTTT |