Table 3 Non-syn SNPs in the homologs between pepper and tomato genes where disease related QTLs have been mapped
Disease | Gene list | Donor species | tomato ID | Pubmed ID | Top hit to Pepper (based on blast score) | SNP context |
|---|---|---|---|---|---|---|
Bacterial speck | Prf | S. pimpinellifolium | Solyc05g013280.2 | 11952131 | CA11g02030 | ATGTCAAGGGTTATAGACCC(T/G)CTTGGTATTACATGTTGTAT |
CCTCTTGGTATTACATGTTG(T/C)ATCTCTCTGATGTTGAGAAA | ||||||
TCTCATCCACTCTGGTACAA(A/C)ATTCTTTGGATTTCTGAAGT | ||||||
GCATTAGGCTATTCAGAGAA(T/A)GTGAAGGGACGGTGTGTTCT | ||||||
TCAAATACTTAGAATTGGAC(A/G)ACCTCAATATTTCACAGTGG | ||||||
Bacterial spot | Bs4 | S. pennellii | Solyc05g007850.1 | 14675431 | CA12g06200 | TGAAAATTGGTATGTAGGTG(C/A)TAACTTCTTGGGATTTTCTG |
TATTTTTCGGAAGAATTGAA(G/C)GAGTTTGGACTTCGTTTGTT | ||||||
TGTATAAAGATGAACCAACA(G/A)AACATGATGATGAAGTCCGT | ||||||
Alternaria stem canker | Asc-1 | S. lycopersicum | Solyc03g114600.2 | 10781105 | CA03g29040 | ATGCTAGGCATTGGCTAAGC(G/T)AATGATTTTTGGAGAGAAGG |
AAGAGTCGGCATGGAAGTTT(G/A)TGTACTTTCTATCTGCTGAG | ||||||
Leaf mold | Cf-4, Cf-9B(Hcr9-9B) | S. habrochaites, S. pimpinellifolium | Solyc01g006550.2 | 9413991 | CA12g07610 | ATCCCATGAACAGCAATCCG(C/T)GCTCCTATTCCACGAAAGAG |
| Â | Â | Â | Â | Â | Â | TGGTGAATCTTCTTCTTCTT(C/T)TTCTTCGTCCAGCTCAACTG |
Fungal disease | LeEIX1, LeEIX2 | S. lycopersicum | Solyc07g008620.1, Solyc07g008630.1 | 15155877 | CA07g01930 | AAGGCCTCTTTTGAACTCAA(C/T)AAGGGCAGCTCTCTCCTTTT |
TTCTTTTTTATCTTCTTCAT(A/C)ACCCCATGTTGATAAACGAC | ||||||
GATGGGAACTCCTCCTCCTC(C/A)TCATCCTCATCATCATCATC | ||||||
AAGAATCCCCAAAATGCGAC(C/G)AAGAAACCTAGCACCATCGA | ||||||
Tobacco mosaic virus | Tm-2a, Tm-2 | S. peruvianum | Solyc09g018220.1 | 17246482, 16172136 | CA03g00810 | CTTAAGGCAACAACAGATTG(C/A)GCCTTTGCACTTGTTGGATT |
TGTTCCCAAATATATTCGGG(T/G)TAGTGACTCTTTGATTAAAA | ||||||
AAAAGAACCCAAAATATTCT(C/A)TATGCAATCCGTAATGAAGA | ||||||
TGTTTGGGCAAAATTGGCTT(A/C)TATTAGAAAAGAACCCAAAA | ||||||
TATTTGCTCTTTCGTGCGAC(C/A)GGAAAAATAGAGCTTCAGAA | ||||||
AGACGACTATCTATCTTAAG(C/A)TCGACAAGAGTAAGCTTGAC | ||||||
Nematode (root knot) | Mi1.2 | S. peruvianum | Solyc06g008450.2 | 9707547 | CA06g00990 | TTAACCAAGTTACCGGCTCG(G/A)ATTTGAAGTTCAGTGAGGAT |