Table 1 Summary of SNPs from YCM334 and Taean against reference genome
Cultivar | Region | Number of SNPs | Number of Indels | ||||||
|---|---|---|---|---|---|---|---|---|---|
Number of total SNP | Homozygous SNP | Heterozygous SNP | Ambiguous SNPa | Number of total Indel | Homozygous Indel | Heterozygous Indel | Ambiguous Indel | ||
YCM334 | intergenic-region | 6,885,942 | 6,592,983 | 109,558 | 183,401 | 347,901 | 172,360 | 25,321 | 150,220 |
genic-region | 116,728 | 106,531 | 3,735 | 6,462 | 11,199 | 4,788 | 1,071 | 5,340 | |
coding sequence (CDS) | 42,786 | 36,950 | 2,146 | 3,690 | 1,918 | 683 | 224 | 1,011 | |
Intron | 73,942 | 69,581 | 1,589 | 2,772 | 9,281 | 4,105 | 847 | 4,329 | |
Total | 7,002,670 | 6,699,514 | 113,293 | 194,563 | 359,100 | 177,148 | 26,392 | 155,560 | |
Taean | intergenic-region | 6,659,677 | 6,344,381 | 120,733 | 120,733 | 329,910 | 160,997 | 24,753 | 144,160 |
genic-region | 120,068 | 109,622 | 3,797 | 6,649 | 11,320 | 4,878 | 1,014 | 5,428 | |
coding sequence (CDS) | 44,392 | 38,238 | 2,186 | 3,968 | 1,880 | 698 | 202 | 980 | |
Intron | 75,676 | 71,384 | 1,611 | 2,681 | 9,440 | 4,180 | 812 | 4,448 | |
Total | 6,779,745 | 6,454,003 | 124,530 | 127,382 | 341,230 | 165,875 | 25,767 | 149,588 | |