Table 1 Read statistics for i:BwAlm and Bowman libraries
From: Identification of nuclear genes controlling chlorophyll synthesis in barley by RNA-seq
i:BwAlm(1) | i:BwAlm(2) | i:BwAlm(3) | Bowman(1) | Bowman(2) | Bowman(3) | |
|---|---|---|---|---|---|---|
Library size (reads) | 4596395 | 3056413 | 5794644 | 4122599 | 4023501 | 6887599 |
Adapters trimmed | 336370 (7,3 %) | 197932 (6,3 %) | 434647 (7,5 %) | 273892 (6,6 %) | 189062 (7,4 %) | 518737 (7,5 %) |
Reads filtered by quality | 542101 (11,79 %) | 409621 (13,4 %) | 429283 (7,41 %) | 330121 (8 %) | 1628646 (40,5 %) | 236444 (3,43 %) |
Library size after pre-processing | 4054279 | 2646786 | 5365347 | 3792465 | 2394836 | 6651154 |
Mean read length after filtering | 171 | 208 | 181 | 177 | 128 | 202 |