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Table 4 The avocado transcripts showing the greatest repression shared in all flooded to non-flooded comparisons at 22 and 48 h post-flooding

From: Transcriptome responses of an ungrafted Phytophthora root rot tolerant avocado (Persea americana) rootstock to flooding and Phytophthora cinnamomi

Seq ID Annotation e-value GO process
Transcripts common between 22 and 48 h in the 30 most highly repressed transcripts
Pa_Contig01489 Aquaporin PIP2.1, putative [Ricinus communis] 2.12E-78 GO:0016021,GO:0016020,GO:0006810,GO:0005215
Pa_Contig01574 TIP protein [Solanum lycopersicum] 9.83E-117 GO:0072489,GO:0005215,GO:0042807,GO:0016021,GO:0016020,GO:0006810, GO:0009705,GO:0015200,GO:0009507
Pa_NA_F_contig07500 Unknown   
Pa_Contig05105 subtilisin-like protease [Nicotiana tabacum] 3.25E-58 GO:0006508,GO:0004252,GO:0008236,GO:0016787,GO:0043086,GO:0008233,GO:0042802
Pa_Contig00100 GDP-L-galactose phosphorylase [Actinidia eriantha] 1.68E-163 GO:0016779,GO:0016740,GO:0008152
Pa_Contig06179 dihydroflavonol 4-reductase [Epimedium sagittatum] 6.45E-30 GO:0044237,GO:0003824,GO:0050662
Pa_Contig00967 phenylalanine ammonia-lyase [Cinnamomum osmophloeum] 3.33E-179 GO:0009698,GO:0009058,GO:0016841,GO:0045548,GO:0005737,GO:0016829,GO:0003824,GO:0006559,GO:0009800
Pa_Contig01429 dihydroflavinol reductase [Dendrobium moniliforme] 3.18E-63 GO:0044237,GO:0003824,GO:0050662
Pa_Contig04550 1,4-alpha-glucan-branching enzyme [Solanum tuberosum] 1.18E-76 GO:0016740,GO:0043169,GO:0009501,GO:0016757,GO:0005978,GO:0005975,GO:0003824, GO:0019252,GO:0004553,GO:0003844,GO:0009507,GO:0009536
Pa_Contig07582 PREDICTED: uncharacterized protein LOC100833771 [Brachypodium distachyon] 1e-06  
Transcripts present in all treatments present only at 22 h
Pa_Contig03065 PREDICTED: protein GAST1-like [Malus domestica] 6e-46  
Pa_Contig07665 chalcone synthase [Vitis vinifera] 6.80E-11 GO:0009753,GO:0009926,GO:0009058,GO:0016210,GO:0009611,GO:0005634,GO:0009813,GO:0006979, GO:0009705,GO:0031540,GO:0009629,GO:0009733,GO:0005783,GO:0010224,GO:0008152,GO:0003824, GO:0016747,GO:0016746,GO:0016740
Pa_Contig03403 Nucleobase ascorbate transporter [Medicago truncatula] 5.44E-85 GO:0009506,GO:0016020,GO:0055085,GO:0006810,GO:0005215
Pa_Contig00312 PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Vitis vinifera] 2.29E-82 GO:0009637,GO:0043565,GO:0042803,GO:0003700,GO:0003677,GO:0005634,GO:0045893,GO:0009737, GO:0009414,GO:0030308,GO:0009788,GO:0048573,GO:0006355,GO:0000976,GO:0048510,GO:0006351
Pa_NA_RC_Contig07454 Unknown   
Pa_Sin_FZ03KKT01A7ZOH PREDICTED: peroxidase 15-like [Solanum lycopersicum] 8.70E-27 GO:0046872,GO:0055114,GO:0020037,GO:0016491,GO:0006979,GO:0004601
Pa_Contig00110 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia] 0 GO:0003849,GO:0016829,GO:0009073
Pa_Contig00619 chalcone synthase [Actinidia chinensis] 5.71E-167 GO:0009058,GO:0016740,GO:0008152,GO:0003824,GO:0016747,GO:0016746
Pa_Contig02129 glutathione S-transferase [Gossypium hirsutum] 2.54E-72 GO:0016740,GO:0008152
Pa_Contig00126 trans-cinnamate 4-hydroxylase [Populus tremuloides] 0 GO:0046872,GO:0055114,GO:0016705,GO:0020037,GO:0016491,GO:0005506,GO:0004497
Transcripts present in all treatments present only at 48 h
Pa_Contig01220 aquaporin TIP1 [Quercus petraea] 1.50E-111 GO:0016021,GO:0016020,GO:0006810,GO:0005215
Pa_Contig05744 chalcone synthase [Persea americana] 6.02E-60 GO:0009058,GO:0016740,GO:0008152,GO:0003824,GO:0016746
Pa_NA_F_contig06354 Unknown   
Pa_Contig04602 starch branching enzyme [Phaseolus vulgaris] 8.55E-51 GO:0004553,GO:0005975,GO:0043169,GO:0003824
Pa_Contig01208 glutathione S-transferase [Salicornia brachiata] 5.75E-79 GO:0016740,GO:0008152
Pa_Contig01583 asparagine synthetase family protein [Populus trichocarpa] 2.32E-102 GO:0005524,GO:0070981,GO:0016874,GO:0006529,GO:0008152,GO:0000166,GO:0008652,GO:0004066
  1. Transcripts were chosen and filtered based on whether they were in the top 30 most repressed transcripts within all treatments