Skip to main content

Table 4 The avocado transcripts showing the greatest repression shared in all flooded to non-flooded comparisons at 22 and 48 h post-flooding

From: Transcriptome responses of an ungrafted Phytophthora root rot tolerant avocado (Persea americana) rootstock to flooding and Phytophthora cinnamomi

Seq ID

Annotation

e-value

GO process

Transcripts common between 22 and 48 h in the 30 most highly repressed transcripts

Pa_Contig01489

Aquaporin PIP2.1, putative [Ricinus communis]

2.12E-78

GO:0016021,GO:0016020,GO:0006810,GO:0005215

Pa_Contig01574

TIP protein [Solanum lycopersicum]

9.83E-117

GO:0072489,GO:0005215,GO:0042807,GO:0016021,GO:0016020,GO:0006810, GO:0009705,GO:0015200,GO:0009507

Pa_NA_F_contig07500

Unknown

  

Pa_Contig05105

subtilisin-like protease [Nicotiana tabacum]

3.25E-58

GO:0006508,GO:0004252,GO:0008236,GO:0016787,GO:0043086,GO:0008233,GO:0042802

Pa_Contig00100

GDP-L-galactose phosphorylase [Actinidia eriantha]

1.68E-163

GO:0016779,GO:0016740,GO:0008152

Pa_Contig06179

dihydroflavonol 4-reductase [Epimedium sagittatum]

6.45E-30

GO:0044237,GO:0003824,GO:0050662

Pa_Contig00967

phenylalanine ammonia-lyase [Cinnamomum osmophloeum]

3.33E-179

GO:0009698,GO:0009058,GO:0016841,GO:0045548,GO:0005737,GO:0016829,GO:0003824,GO:0006559,GO:0009800

Pa_Contig01429

dihydroflavinol reductase [Dendrobium moniliforme]

3.18E-63

GO:0044237,GO:0003824,GO:0050662

Pa_Contig04550

1,4-alpha-glucan-branching enzyme [Solanum tuberosum]

1.18E-76

GO:0016740,GO:0043169,GO:0009501,GO:0016757,GO:0005978,GO:0005975,GO:0003824, GO:0019252,GO:0004553,GO:0003844,GO:0009507,GO:0009536

Pa_Contig07582

PREDICTED: uncharacterized protein LOC100833771 [Brachypodium distachyon]

1e-06

 

Transcripts present in all treatments present only at 22 h

Pa_Contig03065

PREDICTED: protein GAST1-like [Malus domestica]

6e-46

 

Pa_Contig07665

chalcone synthase [Vitis vinifera]

6.80E-11

GO:0009753,GO:0009926,GO:0009058,GO:0016210,GO:0009611,GO:0005634,GO:0009813,GO:0006979, GO:0009705,GO:0031540,GO:0009629,GO:0009733,GO:0005783,GO:0010224,GO:0008152,GO:0003824, GO:0016747,GO:0016746,GO:0016740

Pa_Contig03403

Nucleobase ascorbate transporter [Medicago truncatula]

5.44E-85

GO:0009506,GO:0016020,GO:0055085,GO:0006810,GO:0005215

Pa_Contig00312

PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Vitis vinifera]

2.29E-82

GO:0009637,GO:0043565,GO:0042803,GO:0003700,GO:0003677,GO:0005634,GO:0045893,GO:0009737, GO:0009414,GO:0030308,GO:0009788,GO:0048573,GO:0006355,GO:0000976,GO:0048510,GO:0006351

Pa_NA_RC_Contig07454

Unknown

  

Pa_Sin_FZ03KKT01A7ZOH

PREDICTED: peroxidase 15-like [Solanum lycopersicum]

8.70E-27

GO:0046872,GO:0055114,GO:0020037,GO:0016491,GO:0006979,GO:0004601

Pa_Contig00110

3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia]

0

GO:0003849,GO:0016829,GO:0009073

Pa_Contig00619

chalcone synthase [Actinidia chinensis]

5.71E-167

GO:0009058,GO:0016740,GO:0008152,GO:0003824,GO:0016747,GO:0016746

Pa_Contig02129

glutathione S-transferase [Gossypium hirsutum]

2.54E-72

GO:0016740,GO:0008152

Pa_Contig00126

trans-cinnamate 4-hydroxylase [Populus tremuloides]

0

GO:0046872,GO:0055114,GO:0016705,GO:0020037,GO:0016491,GO:0005506,GO:0004497

Transcripts present in all treatments present only at 48 h

Pa_Contig01220

aquaporin TIP1 [Quercus petraea]

1.50E-111

GO:0016021,GO:0016020,GO:0006810,GO:0005215

Pa_Contig05744

chalcone synthase [Persea americana]

6.02E-60

GO:0009058,GO:0016740,GO:0008152,GO:0003824,GO:0016746

Pa_NA_F_contig06354

Unknown

  

Pa_Contig04602

starch branching enzyme [Phaseolus vulgaris]

8.55E-51

GO:0004553,GO:0005975,GO:0043169,GO:0003824

Pa_Contig01208

glutathione S-transferase [Salicornia brachiata]

5.75E-79

GO:0016740,GO:0008152

Pa_Contig01583

asparagine synthetase family protein [Populus trichocarpa]

2.32E-102

GO:0005524,GO:0070981,GO:0016874,GO:0006529,GO:0008152,GO:0000166,GO:0008652,GO:0004066

  1. Transcripts were chosen and filtered based on whether they were in the top 30 most repressed transcripts within all treatments