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Table 3 The avocado transcripts showing the greatest induction shared in all flooded to non-flooded comparisons at 22 and 48 h post-flooding

From: Transcriptome responses of an ungrafted Phytophthora root rot tolerant avocado (Persea americana) rootstock to flooding and Phytophthora cinnamomi

Seq ID Annotation e-value GO process
Transcripts common between 22 and 48 h in the 30 most highly expressed transcripts
Pa_Contig05239 Unknown   
Pa_Contig04056 hypothetical protein PRUPE_ppa015169mg [Prunus persica] 1e-08  
Pa_Contig00475 PREDICTED: bidirectional sugar transporter SWEET1 [Vitis vinifera] 2.88E-78 GO:0016021,GO:0016020,GO:0008643, GO:0051119,GO:0006810,GO:0005783,GO:0005887,GO:0005886,GO:0034219
Pa_Contig00796 cysteine desulfurylase, putative [Ricinus communis] 2.08E-76 GO:0016740,GO:0008152,GO:0003824,GO:0031071,GO:0030170
Pa_Contig00929 PREDICTED: 7-alpha-hydroxysteroid dehydrogenase [Vitis vinifera] 2.68E-99 GO:0005777
Pa_Contig03277 PREDICTED: uncharacterized protein LOC100260129 [Vitis vinifera] 1.42E-48 GO:0005509
Pa_Contig06216 hypothetical protein PRUPE_ppa013087mg [Prunus persica] 8.74E-19 GO:0005509
Pa_Contig04134 PREDICTED: uncharacterized protein LOC104223251 [Nicotiana sylvestris] 9e-20  
Pa_Contig07270 Unknown   
Pa_Contig00297 alcohol-dehydrogenase family protein [Populus trichocarpa] 0 GO:0046872,GO:0055114,GO:0016491,GO:0008270
Pa_Contig04583 Unknown   
Pa_Contig05040 PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] 2.84E-30 GO:0055114,GO:0047800
Pa_Contig03479 PREDICTED: ABC transporter B family member 21-like [Solanum tuberosum] 8.63E-88 GO:0006855,GO:0009506,GO:0006200,GO:0005524,GO:0009735,GO:0009733,GO:0016021,GO:0008152,GO:0048767,GO:0055085,GO:0008559,GO:0000166,GO:0016887,GO:0010315,GO:0017111,GO:0042908,GO:0042626,GO:0006810,GO:0009630,GO:0010540,GO:0005886,GO:0010329,GO:0010328,GO:0060919
Transcripts common in all treatments present only at 22 h
Pa_Contig04226 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao] 3e-21  
Pa_Contig07556 PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [Phoenix dactylifera] 2e-10  
Pa_Sin_GI32N0T02IUGTU alcohol dehydrogenase [Citrus x paradisi] 4.76E-17 GO:0046872,GO:0055114,GO:0016491,GO:0008270
Pa_NA_RC_Contig03244 Unknown   
Pa_Contig02574 PREDICTED: universal stress protein MJ0531-like isoform 2 [Solanum lycopersicum] 3.11E-60 GO:0006950,GO:0005773
Pa_Contig00088 pyruvate decarboxylase [Prunus armeniaca] 0 GO:0030976,GO:0000287,GO:0008152,GO:0004737,GO:0003824,GO:0016829
Pa_Contig00434 hypothetical protein PRUPE_ppa007712mg [Prunus persica] 1.22E-79 GO:0003950,GO:0008152
Pa_Contig07234 Unknown   
Pa_Contig03497 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao] 2e-19  
Transcripts common in all treatments present only at 48 h
Pa_Contig01112 hypothetical protein OsI_03610 [Oryza sativa Indica Group] 9.52E-104 GO:0008152,GO:0003824,GO:0030170
Pa_Contig00627 PREDICTED: mannose-specific lectin 3-like [Musa acuminata subsp. malaccensis] 1e-26  
Pa_Contig01979 hypothetical protein VITISV_003190 [Vitis vinifera] 7e-15  
Pa_Contig06346 multidrug resistance protein 1, 2, putative [Ricinus communis] 4.55E-28 GO:0042626,GO:0016021,GO:0042908,GO:0016787,GO:0006810,GO:0006200,GO:0000166,GO:0008559,GO:0017111,GO:0015415,GO:0005524,GO:0016887,GO:0035435,GO:0006855,GO:0055085,GO:0008152
Pa_Contig03685 conserved hypothetical protein [Ricinus communis] 5.73E-16 GO:0016021,GO:0016020
  1. Transcripts were chosen and filtered based on whether they were in the 30 most induced transcripts within all treatments