|
Comparison
|
FI vs C
|
I vs C
|
F vs C
|
FI vs I
|
F vs I
|
F vs FI
|
|---|
|
22 h
|
|
Up-regulated
|
1134
|
4
|
1010
|
1057
|
954
|
0
|
|
Down-regulated
|
779
|
0
|
769
|
795
|
814
|
0
|
|
Ratio
|
1.46
|
na
|
1.31
|
1.33
|
1.17
|
na
|
|
r
|
−0.43
|
0.89
|
−0.38
|
−0.39
|
−0.38
|
0.90
|
|
48 h
|
|
Up-regulated
|
1217
|
16
|
1230
|
1129
|
0
|
1200
|
|
Down-regulated
|
1068
|
10
|
1000
|
1047
|
1
|
1006
|
|
Ratio
|
1.14
|
1.6
|
1.23
|
1.08
|
0
|
1.19
|
|
r
|
−0.55
|
0.86
|
−0.55
|
−0.48
|
0.90
|
−0.51
|
| |
22 vs 48 h (FI)
|
22 vs 48 h (I)
|
22 vs 48 h (C)
|
22 vs 48 h (F)
| | |
|
Up-regulated
|
45
|
30
|
0
|
7
| | |
|
Down-regulated
|
25
|
32
|
8
|
11
| | |
|
Ratio
|
1.8
|
0.94
|
0
|
0.64
| | |
|
r
|
0.80
|
0.82
|
0.90
|
0.82
| | |
-
aAny duplicate probes were removed before calculating the number of significantly expressed transcripts. Comparisons are separated into time-points, with the number of up-regulated and down-regulated transcripts (Adj. P-value <0.05, log2fold change >1 or < -1) shown for each comparison. Comparisons between time-points are also shown. The ratio of up-regulated to down-regulated genes is indicated. The Pearson correlation coefficient (r) is indicated for each comparison. Flooded and infected (FI), infected (I), flooded (F), and control (C)
