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Table 4 Molecular and biochemical function of selected genes potentially involved in cell wall dynamic

From: Cell wall dynamics during apple development and storage involves hemicellulose modifications and related expressed genes

Molecular function Biochemical annotation Gene_id
Cluster A Cluster B
Pectin biosynthesis Galacturonosyltransferase (GAUT) MDP0000179747 MDP0000609623
Galacturonosyltransferase-like (GATL) MDP0000124674, MDP0000518347, MDP0000678218, MDP0000794936, MDP0000856834, MDP0000370712  
Pectin degradation Glycoside hydrolase family 79 (GH79) MDP0000199066  
Pectate lyase MDP0000266603, MDP0000277149, MDP0000319156, MDP0000631698, MDP0000232225, MDP0000394944, MDP0000693765, MDP0000818931  
Pectin acetylesterase MDP0000193151, MDP0000834641  
Pectin esterase MDP0000177299, MDP0000212502 MDP0000251256, MDP0000252508, MDP0000287234
Pectin methylesterase inhibitor MDP0000250584 MDP0000836165
Polygalacturonase (PG) MDP0000147794, MDP0000175027, MDP0000251956, MDP0000665344, MDP0000270685 MDP0000249285
Cellulose/Hemicelluloses biosynthesis UDP-xylosyltransferase MDP0000197595  
Cellulose synthase MDP0000185368, MDP0000322053  
Cellulose synthase-like A (CSLA) MDP0000263736, MDP0000133719, MDP0000717000, MDP0000131947, MDP0000659120, MDP0000673496  
Cellulose synthase-like E (CSLE)   MDP0000196876
Cellulose/Hemicelluloses degradation α-arabinofuranosidase/α-xylosidase MDP0000208161  
α-L-fucosidase MDP0000166406 MDP0000543167
β -glucosidase MDP0000140817  
Glycoside hydrolase family 1 (GH1) MDP0000217844, MDP0000147765  
Glycosyl hydrolase family 9 (GH9) MDP0000147635, MDP0000131397, MDP0000561662  
Xyloglucan endotransglycosylase/hydrolase (XTH) MDP0000180043, MDP0000132431, MDP0000378203  
Glycoproteins Arabinogalactan protein (AGP) MDP0000221961, MDP0000893240  
Fasciclin-like arabinogalactan-protein (FLA) MDP0000525641, MDP0000658332  
Hydroxyproline-rich glycoprotein family protein (HRGP) MDP0000144792, MDP0000697140, MDP0000849284  
Wall associated kinase (WAK) MDP0000630155  
Wall associated kinase-like (WAKL)   MDP0000278145, MDP0000426154
Expansins Expansin A (EXPA) MDP0000259640, MDP0000785413, MDP0000257797  
Expansin-like A (EXLA) MDP0000568045 MDP0000906812
Expansin-like B (EXLB)   MDP0000214811, MDP0000292477
Galactosyltransferases Galactosyltransferase MDP0000198402, MDP0000237443  
β-galactosidases β-galactosidases MDP0000030527, MDP0000195063, MDP0000201058, MDP0000227393, MDP0000310582, MDP0000899966, MDP0000151981, MDP0000265046, MDP0000271897, MDP0000895533, MDP0000682327 MDP0000127542, MDP0000416548, MDP0000944874
Peroxidases Peroxidase MDP0000272643, MDP0000678562, MDP0000488361, MDP0000221335, MDP0000122663 MDP0000142485
Transport H(+)-ATPase MDP0000810883  
Anion transporter MDP0000142911, MDP0000877937  
K+ transporter MDP0000414314, MDP0000800190, MDP0000889811, MDP0000170687, MDP0000853168, MDP0000778372 MDP0000403872
Cation transporter MDP0000470237  
Zinc transporter MDP0000320480  
Monosaccharide transporter MDP0000485591  
Hexose transporter   MDP0000216376, MDP0000219430
Polyol transporter MDP0000239167, MDP0000251579, MDP0000841918  
Sugar transporter MDP0000219048, MDP0000318992 MDP0000266249
  1. Genes were annotated according to their similarity with Arabidospis genes (TAIR) and Mapman classification. Their deduced protein sequences where also search in ProtAnnDB, CAZy and Peroxibase databases