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Table 1 Promoter elements enriched in promoters affected in 35S:ROXY19 plants (line #8)

From: Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana

 

35S:ROXY19#8

Average selection

Ratio: total motifs

p-value

Motif

Promoter hits

Total motifs

Promoter hits

Total motifs

TGACG

226

439

173.8

278.0

1.58

0

TGACGT

140

214

69.5

87.0

2.45

0

TTACGT

123

193

95.2

126.8

1.52

0

TACGTC

56

58

24.8

26.7

2.17

0

TTACGTA

49

72

28.2

36.6

1.97

0

TGACGTCA

27

27

4.2

4.4

6.19

0

CATGCAY

84

122

55.6

76.3

1.60

0

TTTATATA

120

175

84.4

114.4

1.53

0

TAAAATAT

106

157

77.9

104.4

1.50

0

  1. The occurrence of enriched motifs was determined in the 1-kb sequences upstream of the 5′-untranslated regions. Upper panel: Analysis of 321 promoters belonging to 337 transcripts that are less abundant in 35S:ROXY19 than in Col-0 plants. Lower panel: Analysis of 292 promoters belonging to the 299 transcripts that are more abundant in 35S:ROXY19 plants than in Col-0 plants. Numbers represent the total number of promoters (promoter hits) that contain the indicated motif or the total amount of motifs within the set of promoters affected by ROXY19 and within randomly chosen sets of promoters from the whole genome. With the exception of the TGACGTCA motif, only elements are shown that occur in at least 10 % of the selected promoters and which are enriched by at least 1.5-fold and p = 0. The ACGT core sequence is shown in bold in order to document that variants of this sequence with different flanking bases are enriched