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Table 1 Promoter elements enriched in promoters affected in 35S:ROXY19 plants (line #8)

From: Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana

  35S:ROXY19#8 Average selection Ratio: total motifs p-value
Motif Promoter hits Total motifs Promoter hits Total motifs
TGACG 226 439 173.8 278.0 1.58 0
TGACGT 140 214 69.5 87.0 2.45 0
TTACGT 123 193 95.2 126.8 1.52 0
TACGTC 56 58 24.8 26.7 2.17 0
TTACGTA 49 72 28.2 36.6 1.97 0
TGACGTCA 27 27 4.2 4.4 6.19 0
CATGCAY 84 122 55.6 76.3 1.60 0
TTTATATA 120 175 84.4 114.4 1.53 0
TAAAATAT 106 157 77.9 104.4 1.50 0
  1. The occurrence of enriched motifs was determined in the 1-kb sequences upstream of the 5′-untranslated regions. Upper panel: Analysis of 321 promoters belonging to 337 transcripts that are less abundant in 35S:ROXY19 than in Col-0 plants. Lower panel: Analysis of 292 promoters belonging to the 299 transcripts that are more abundant in 35S:ROXY19 plants than in Col-0 plants. Numbers represent the total number of promoters (promoter hits) that contain the indicated motif or the total amount of motifs within the set of promoters affected by ROXY19 and within randomly chosen sets of promoters from the whole genome. With the exception of the TGACGTCA motif, only elements are shown that occur in at least 10 % of the selected promoters and which are enriched by at least 1.5-fold and p = 0. The ACGT core sequence is shown in bold in order to document that variants of this sequence with different flanking bases are enriched