Trait/treatment | Position in cM (2-LOD intervals) | Additive effect | % variance explained | Closest marker | P-value of QTL × E (P < 0.05) |
---|---|---|---|---|---|
Chromosome 1 | |||||
  g s -WW | 25.6 (22.5-26.4) | 0.010 | 7.7 | A01x7382304 |  |
  A-WW | 25.6 (24.2-26.4) | 0.91 | 4.6 | A01x7382304 |  |
  A-DR | 27.3 (26.4-29.6) | 1.58 | 11.8 | A01x8029418 |  |
 belowground biomass-DR | 30.5 (29.3-31.3) | 0.082 | 15.8 | A01x8409488 |  |
 leaf area-DR | 30.5 (26.9-34.2) | 0.67 | 6.8 | A01x8409488 |  |
 root:shoot ratio-WW | 30.5 (28.9-35) | 0.0015 | 12.6 | A01x8409488 |  |
 aboveground biomass-DR | 32.2 (31.3-35.3) | 2.12 | 13.6 | A01x8682528 |  |
 belowground biomass-WW | 33.4 (33-36) | 0.122 | 13.8 | A01x9090747 |  |
  g s -DR | 34.2 (33.4-35.1) | 0.022 | 19.2 | A01x9141005 | p = 0.0269 |
 aboveground biomass-WW | 42.8 (40.8-44.5) | 3.04 | 9.3 | A01x10838067 |  |
 LMA-WW | 46.1 (44.6-46.5) | -2.08 | 18.7 | A01x14360906 | p = 0.039 |
 leaf area-WW | 89.7 (86.5-91.3) | 1.33 | 7.4 | A01x26133588 |  |
 δ13C-DR | 89.7 (88.3-91.1) | 0.63 | 23.0 | A01x26133588 |  |
  W g -DR | 90.5 (86.2-91.3) | 2.67 | 17.1 | A01x26378441 |  |
 aboveground biomass-WW | 91.3 (90.2-92.1) | 3.18 | 10.9 | A01x26495518 |  |
  Fv'/Fm'-WW | 91.3 (90.4-92.1) | 0.032 | 24.0 | A01x26495518 |  |
 height-DR | 91.3 (89.6-92.1) | 2.56 | 9.6 | A01x26495518 |  |
  A-WW | 91.3 (89.5-92.1) | 1.47 | 11.4 | A01x26495518 |  |
  A-DR | 91.3 (89.3-92.1) | 1.53 | 10.6 | A01x26495518 |  |
 fruit production-WW | 91.3 (90.1-92.1) | 13.0 | 39.1 | A01x26495518 |  |
  Fv'/Fm'-DR | 91.6 (90.3-91.3) | 0.038 | 20.6 | A01x26495518 |  |
 fruit production-DR | 92.1 (89.7-92.1) | 10.2 | 17.5 | A01x26649666 | p = 0.0464 |
  g s -WW | 92.1 (89.2-92.1) | 0.012 | 10.8 | A01x26649666 |  |
 δ13C -WW | 92.1 (86.3-92.1) | 0.31 | 6.4 | A01x26649666 |  |
 leaf area-DR | 92.1 (90.1-92.1) | 0.62 | 5.5 | A01x26649666 |  |
Chromosome 2 | |||||
  g s -DR | 18.6 (14.8-21.2) | -0.014 | 23.9 | A02x1600026 |  |
 leaf area-DR | 64.9 (49.7-65.3) | 0.65 | 5.9 | A02x9399462 |  |
 root:shoot ratio-WW | 65.3 (52.3-69) | 0.0012 | 8.3 | A02x9415100 |  |
  g s -WW | 72.7 (71.9-77.3) | 0.009 | 6.0 | A02x11479009 |  |
 belowground biomass-DR | 72.7 (72.3-74.4) | 0.048 | 5.0 | A02x11479009 |  |
 belowground biomass-WW | 76.6 (72.3-78.7) | 0.122 | 12.2 | A02x12174045 |  |
 aboveground biomass-WW | 76.9 (75.6-77.7) | 2.30 | 5 | A02x12745444 |  |
 leaf area-WW | 77.3 (73.1-79) | 1.41 | 7.4 | A02x12927010 |  |
Chromosome 3 | |||||
 belowground biomass-WW | 2 (0-8.1) | 0.104 | 8.5 | A03x97360 |  |
 aboveground biomass-WW | 4.5 (2.4-6.2) | 2.68 | 7.0 | A03x1233655 | P = 0.0336 |
 leaf area-WW | 4.5 (2.4-8.1) | 1.39 | 7.7 | A03x1233655 |  |
 days to flowering-WW | 9.8 (8.2-14.5) | 0.55 | 8.5 | A03x1786910 |  |
 height-WW | 30.8 (29.9-31.2) | 4.75 | 25.7 | A03x5439663 |  |
 height-DR | 30.8 (29.9-31.2) | 2.98 | 14.8 | A03x5439663 |  |
 root:shoot ratio-DR | 36.7 (32.6-37.9) | -0.0035 | 9.9 | A03x6224923 |  |
 days to flowering-WW | 67.8 (67-72.8) | 0.52 | 9.2 | A03x12997092 |  |
  A-WW | 68.2 (67.9-69.5) | -1.84 | 16.7 | A03x13128260 |  |
  A-DR | 70.5 (66.6-72.7) | -1.29 | 6.5 | A03x13687552 |  |
 height-WW | 70.5 (68.6-71.1) | -2.44 | 5.7 | A03x13687552 |  |
 height-DR | 75.2 (74.4-78.1) | -1.94 | 6.0 | A03x14491869 |  |
 days to flowering-DR | 75.2 (74.4-79.8) | 0.57 | 7.4 | A03x14491869 |  |
 δ13C -WW | 76.5 (75.6-77) | -0.63 | 27 | A03x14585658 |  |
 δ13C -DR | 76.5 (75.6-78.1) | -0.81 | 37.7 | A03x14585658 |  |
  Fv'/Fm'-DR | 76.5 (75.6-77.9) | -0.036 | 22.7 | A03x14585658 |  |
  Fv'/Fm'-WW | 76.9 (79.4-81) | -0.039 | 40.0 | A03x14767219 |  |
 fruit production-DR | 76.9 (75-78) | -25.6 | 21.5 | A03x14767219 |  |
  W g -WW | 76.9 (75.7-78.1) | -1.07 | 11.0 | A03x14767219 |  |
 aboveground biomass-DR | 77.7 (75.6-83.9) | -1.94 | 10.5 | A03x14933805 |  |
 leaf area-DR | 80.2 (74.9-81) | -0.64 | 4.8 | A03x15439617 |  |
 belowground biomass-DR | 81 (77.7-83.5) | -0.056 | 8.1 | A03x15589868 |  |
 leaf area-WW | 83.1 (81-86.4) | -1.24 | 6.6 | A03x15983737 |  |
 aboveground biomass-WW | 86 (83.9-90.1) | -2.48 | 6.1 | A03x16388952 |  |
  Fv'/Fm'-WW | 110.4 (107.4-112.7) | 0.022 | 7.6 | A03x21952964 |  |
 δ13C -DR | 115.7 (112.8-116.1) | 0.31 | 4.3 | A03x23208268 |  |
 belowground biomass-DR | 115.7 (113-120.3) | 0.046 | 3.8 | A03x23208268 |  |
Chromosome 4 | |||||
 root:shoot ratio-DR | 23.5 (22.3-26.8) | 0.0186 | 4.8 | A04x7829955 |  |
 δ13C -WW | 39.2 (36.9-41.3) | -0.27 | 5.2 | A04x12883502 |  |
 fruit production-DR | 50.8 (49.7-52.8) | 18.8 | 6.9 | A04x15025757 |  |
  A-WW | 52.4 (49.6-56) | 1.03 | 5.7 | A04x15133897 |  |
Chromosome 5 | |||||
  W g -WW | 19.5 (19.1-28.6) | -1.5 | 12.1 | A05x2841024 |  |
 δ13C-DR | 47.1 (33-47.9) | -0.37 | 5.8 | A05x18948334 |  |
 root:shoot ratio-DR | 72 (65.6-72.4) | -0.0027 | 5.3 | A05x22970845 |  |
Chromosome 6 | |||||
 root:shoot ratio-WW | 35.2 (30.4-39) | 0.0011 | 7.8 | A06x11042216 |  |
 height-DR | 42.7 (40.7-46.6) | 2.10 | 7.4 | A06x16894473 |  |
 days to flowering-DR | 50.5 (48.1-52.1) | 0.48 | 5.6 | A06x19335038 |  |
  g s -WW | 53.9 (51.4-57.1) | 0.013 | 12.8 | A06x20616311 |  |
 δ13C -WW | 76.2 (72.9-78.7) | -0.27 | 5.0 | A06x22977608 |  |
Chromosome 7 | |||||
  g s -WW | 1.2 (0-3.3) | 0.010 | 7.6 | A07x385264 |  |
 δ13C -DR | 16.6 (16-18.2) | -0.52 | 10.7 | A07x9046546 |  |
 δ13C -WW | 16.9 (16.6-19) | -0.51 | 7.7 | A07x9118045 |  |
  g s -DR | 20.7 (19.4-23.2) | 0.019 | 15.0 | A07x9827612 |  |
 days to flowering-DR | 28.2 (22.4-29.9) | -0.49 | 6.3 | A07x11888127 |  |
 δ13C-DR | 31.1 (30-32.8) | 0.41 | 6.5 | A07x12258663 |  |
  Fv'/Fm'-WW | 31.1 (30.3-33.2) | 0.021 | 6.5 | A07x12258663 |  |
  A-WW | 46.5 (43.7-46.9) | 0.96 | 4.8 | A07x16000246 |  |
 root:shoot ratio-DR | 70 (68.8-71.7) | -0.0024 | 7.7 | A07x20416077 |  |
 root:shoot ratio-WW | 75.8 (75-77.5) | -0.0019 | 9.7 | A07x22133032 |  |
 LMA-WW | 75.8 (74.6-77.5) | -1.24 | 9.4 | A07x22133032 |  |
Chromosome 8 | |||||
 LMA-WW | 38.6 (35.3-39.8) | -1.17 | 8.9 | A08x16635085 |  |
 δ13C-WW | 52.6 (51.4-54.3) | -0.23 | 3.8 | A08x18475462 |  |
  Fv'/Fm'-DR | 55.5 (54.3-57.1) | -0.017 | 5.4 | A08x18740873 |  |
 height-WW | 70.6 (63.6-75.5) | -2.13 | 5.0 | A08x19709873 |  |
Chromosome 9 | |||||
 leaf area-WW | 10 (4.6-10.4) | -0.95 | 3.9 | A09x1412906 |  |
 days to flowering-WW | 27.6 (27.3-30.9) | -0.55 | 8.8 | A09x4597771 |  |
 δ13C-WW | 64.3 (61.4-66.8) | -0.31 | 6.2 | A09x11485309 |  |
  g s -WW | 66.4 (64.4-68.5) | 0.013 | 11.0 | A09x12890329 |  |
  W g -WW | 67.2 (62.3-69.7) | -0.85 | 6.5 | A09x13903113 |  |
 days to flowering-WW | 67.6 (65.2-69) | 0.49 | 6.0 | A09x14125759 |  |
 aboveground biomass-DR | 68.9 (68-71.9) | 3.15 | 26.2 | A09x14496888 |  |
 fruit production-DR | 69.3 (68.5-70.3) | 31.7 | 23.0 | A09x18372050 | p = 0.0267 |
 leaf area-DR | 69.3 (67.7-70.1) | 1.05 | 12.8 | A09x18372050 | p = 0.0493 |
 aboveground biomass-WW | 69.7 (68.6-70.1) | 4.08 | 12.5 | A09x18352859 |  |
 belowground biomass-WW | 70.1 (68.9-72.9) | 0.117 | 10.0 | A09x17690478 |  |
 leaf area-WW | 70.5 (69.1-71.9) | 2.24 | 18.3 | A09x17079326 | p = 0.0091 |
 belowground biomass-DR | 71.9 (69.7-74.1) | 0.077 | 11.4 | A09x20118570 |  |
 fruit production-WW | 74.2 (72.6-75.1) | 44.4 | 16.2 | A09x22639439 | p = 0.0377 |
 height-WW | 82.8 (80.4-83.2) | 2.09 | 4.9 | A09x25757167 |  |
 days to flowering-WW | 91.4 (90.4-94.1) | 0.62 | 12.5 | A09x29142734 |  |
  A-WW | 111.8 (107.7-115.1) | 0.87 | 4.1 | A09x32285047 |  |
  g s -WW | 116.4 (114.3-118) | 0.009 | 5.4 | A09x33224026 |  |
 leaf area-WW | 130.7 (128.9-133.8) | 2.08 | 18.6 | A09x34452870 | p = 0.0075 |
Chromosome 10 | |||||
 height-DR | 16.9 (12.8-20.3) | 1.75 | 4.7 | A10x1631569 |  |
 height-WW | 17.8 (16.5-20.3) | 2.07 | 4.8 | A10x1623273 |  |
  Fv'/Fm'-WW | 18.8 (16.1-20.3) | 0.014 | 4.5 | A10x1374109 |  |
  Fv'/Fm'-DR | 28.3 (25.2-36.1) | 0.016 | 4.6 | A10x6937636 |  |
 fruit production-DR | 32.3 (27.3-33.5) | 14.6 | 7.1 | A10x7207245 |  |
 fruit production-WW | 48.3 (46.2-53) | 24.8 | 5.6 | A10x11176662 | p = 0.04 |
 days to flowering-WW | 58 (56.3-58.6) | 0.54 | 8.3 | A10x12382013 |  |
  g s -DR | 60 (59.2-61.6) | -0.013 | 6.2 | A10x12574844 |  |
 root:shoot ratio-DR | 74.1 (72.6-76.1) | 0.0024 | 7.4 | A10x13586998 | p = 0.0091 |
 height-DR | 79.9 (76.1-80.7) | -1.82 | 4.5 | A10x14153811 |  |