Table 2 Metrics and topological indicators of the stoichiometric model of Arabidopsis thaliana
Entity | Value | |
|---|---|---|
Content: | Transformers: | 400 |
 Reactions: | 229 | |
 Transporters: | 155 | |
 Polymerizators: | 16 | |
Compounds: | 423 | |
 Balanced compounds: | 413 | |
ORFs: | 742 | |
Degree of freedom (df) | Total df: | 15 |
 Inner df: | 10 | |
 Outer df: | 5 | |
Conserved moieties | There are 28 conserved moieties across all compartments of the model, among them there are only a biologically determined moieties: - NAD(P)H/NAD(P) [all compartments] - CoQH2/CoQ [mitochondria] - THF/5-Formyl-THF/5,10-Methylene-THF/5-Methyl-THF [tetrahydrofolate : cytoplasms] - CoA/Acetyl-CoA [CoA : cytoplasms] - CoA/Acetyl-CoA/Succinyl-CoA [CoA : mitochondria] - CytC(red)/ CytC(ox) [cytochrome c : mitochondria] - Fd(red)/Fd(ox) [ferredoxin : plastid] - PQH2/PQ [plastoquinone : plastid] - PC(red)/PC(ox) [plastocyanine : plastid] - ATP/ADP [mitochondria] - ADP-glc/ATP/ADP/AMP/APS [plastid] | |
Nullspace | 15 solution spaces | |
Parallel routes & cycles | 10 routes | |