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Table 4 PHY-regulated pri-miRNAs and the predicted targets of their mature miRNA in wheat

From: RNA-seq studies using wheat PHYTOCHROME B and PHYTOCHROME C mutants reveal shared and specific functions in the regulation of flowering and shade-avoidance pathways

  

Pri-miRNA counts

 

Target counts

Pri-miRNA

Ensembl ID

Wild-type

phyB-null

Putative target

Wild-type

phyB-null

PHYB targets

      

 miR530-A

isotig11608

16

7,627

TZP

4,603

1,734

 miR530-B

isotig11608

12

3,518

   

 miR393b-A

td-k31_contig_70403

11

45

TIR1-like1

269

270

    

TIR1-like2

469

391

 miR156g-A

td-k31_contig_75281

34

123

SPL family

Multiple

Multiple

PHYC targets

 

Wild-type

phyC-null

Putative target

Wild-type

phyC-null

 miR5200-A

td-k35_contig_61886

72

955

FT1

342

2

 miR5200-B

td-k21_contig_55327

2,613

12,198