From: Genome-wide association mapping of quantitative traits in a breeding population of sugarcane
Locus | Cane Yield | Sugar Content | DArT sequence size (pb) | BLAST algorithm d | Result from alignament with S. bicolor | Identity | Expect | Locus tag | Sorghum chromosome | GenBank ID | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2009 | 2010 | 2011 | 2009 | 2010 | 2011 | |||||||||
M151 | * | Â | * | Â | Â | Â | 748 | blastn | hypothetical protein | 49/64(77Â %) | 0.001 | Sb01g041060 | 1 | XM_002468130.1 |
M97 | Â | * | * | Â | Â | Â | 456 | m blast | hypothetical protein | 419/459(91Â %) | 9.00E-173 | Sb02g004780 | 2 | XM_002461519.1 |
M41 | Â | Â | Â | Â | * | ** | 263 | blastn | hypothetical protein | 45/58(78Â %) | 0.25 | Sb02g028450 | 2 | XM_002460412.1 |
M91 | * | * | Â | Â | Â | Â | 404 | dm blast | hypothetical protein | 68/68(100Â %) | 1.00E-27 | Sb03g004640 | 3 | XM_002457229.1 |
M64 | Â | Â | Â | * | * | * | 291 | m blast | hypothetical protein | 287/291(99Â %) | 6.00E-143 | Sb03g035700 | 3 | XM_002456357.1 |
M78 | Â | Â | Â | * | Â | * | 474 | m blast | hypothetical protein | 79/83(95Â %) | 4E-30 | Sb04g025280 | 4 | XM_002452369.1 |
M125 | Â | * | * | Â | Â | Â | 1048 | dm blast | hypothetical protein | 87/121(72Â %) | 9E-08 | Sb05g000890 | 5 | XM_002448838.1 |
M95 | Â | * | * | Â | Â | Â | 545a | dm blast | hypothetical protein | 122/146(84Â %) | 2E-37 | Sb06g014780 | 6 | XM_002447689.1 |
M50 | Â | * | * | Â | Â | Â | 545a | dm blast | hypothetical protein | 122/146(84Â %) | 2E-37 | Sb06g014780 | 6 | XM_002447689.1 |
M120 | Â | * | * | Â | Â | Â | 457 | m blast | hypothetical protein | 407/435(94Â %) | 0 | Sb06g000450 | 6 | XM_002445961.1 |
M57 | Â | Â | Â | Â | * | *** | 60 | blastn | hypothetical protein | 20/21(95Â %) | 0.34 | Sb06g000690 | 6 | XM_002445988.1 |
M189 | Â | * | * | Â | Â | Â | 355 | blastn | hypothetical protein | 18/18(100Â %) | 1.2 | Sb06g025190 | 6 | XM_002448276.1 |
M46 | * | * | Â | Â | Â | Â | 371b | m blast | hypothetical protein | 119/121(98Â %) | 4E-54 | Sb07g020840 | 7 | XM_002444326.1 |
M30 | * | ** | Â | Â | Â | Â | 384b | m blast | hypothetical protein | 119/121(98Â %) | 4E-54 | Sb07g020840 | 7 | XM_002444326.1 |
M71 | Â | * | * | Â | Â | Â | 425 | blastn | hypothetical protein | 59/73(81Â %) | 3.00E-09 | Sb08g022800 | 8 | XM_002443601.1 |
M58 | Â | ** | * | Â | Â | * | 566 c | m blast | hypothetical protein | 354/371(95Â %) | 7E-168 | Sb09g002270 | 9 | XM_002439164.1 |
M54 | Â | ** | * | Â | Â | * | 566 c | m blast | hypothetical protein | 354/371(95Â %) | 7E-168 | Sb09g002270 | 9 | XM_002439164.1 |
M168 | Â | Â | Â | * | * | Â | 384 | m blast | hypothetical protein | 368/384(96Â %) | 7E-176 | Sb09g015250 | 9 | XM_002440847.1 |
M59 | Â | * | * | Â | Â | Â | 468 | blastn | hypothetical protein | 23/25(92Â %) | 0.13 | Sb09g007900 | 9 | XM_002439437.1 |
M193 | Â | * | ** | Â | Â | Â | 604 | blastn | hypothetical protein | 18/18(100Â %) | 2.1 | Sb09g014225 | 9 | XM_002439535.1 |
M153 | Â | Â | Â | Â | * | * | 753 | dm blast | hypothetical protein | 85/87(98Â %) | 6E-35 | Sb10g006890 | 10 | XM_002437984.1 |
M14 | Â | Â | Â | Â | * | * | 427 | blastn | hypothetical protein | 23/24(96Â %) | 0.43 | Sb10g010770 | 10 | XM_002438218.1 |
M188 | Â | * | Â | Â | * | * | 578 | blastn | hypothetical protein | 29/34(85Â %) | 0.59 | Sb10g023910 | 10 | XM_002437224.1 |
M45 | Â | Â | Â | ** | Â | * | 749 | blastn | alpha kafirin | 79/98(81Â %) | 3.00E-18 | unassigned | Â | Y17556.1 |
M181 | Â | Â | Â | ** | Â | * | 749 | blastn | alpha kafirin | 46/46(100Â %) | 5E-16 | unassigned | Â | Y17556.1 |
M108 | * | Â | * | Â | Â | Â | 488 | m blast | alpha kafirin | 61/62(98Â %) | 7E-23 | unassigned | Â | Y17556.1 |
M173 | Â | * | Â | Â | * | * | 662 | blastn | alpha kafirin | 39/41(95Â %) | 5E-09 | unassigned | Â | Y17556.1 |
M5 | Â | Â | Â | Â | * | * | na | Â | Â | Â | Â | Â | Â | Â |
M86 | Â | Â | Â | Â | * | * | na | Â | Â | Â | Â | Â | Â | Â |
M32 | Â | * | * | Â | Â | Â | na | Â | Â | Â | Â | Â | Â | Â |
M198 | * | Â | * | Â | Â | Â | na | Â | Â | Â | Â | Â | Â | Â |
M197 | ** | * | Â | Â | Â | Â | na | Â | Â | Â | Â | Â | Â | Â |
M203 | * | * | Â | Â | Â | Â | na | Â | Â | Â | Â | Â | Â | Â |