Skip to main content

Table 5 Summary of results found for markers associated with traits of interest at least in two years of study and comparison with sorghum genome

From: Genome-wide association mapping of quantitative traits in a breeding population of sugarcane

Locus

Cane Yield

Sugar Content

DArT sequence size (pb)

BLAST algorithm d

Result from alignament with S. bicolor

Identity

Expect

Locus tag

Sorghum chromosome

GenBank ID

2009

2010

2011

2009

2010

2011

M151

*

 

*

   

748

blastn

hypothetical protein

49/64(77 %)

0.001

Sb01g041060

1

XM_002468130.1

M97

 

*

*

   

456

m blast

hypothetical protein

419/459(91 %)

9.00E-173

Sb02g004780

2

XM_002461519.1

M41

    

*

**

263

blastn

hypothetical protein

45/58(78 %)

0.25

Sb02g028450

2

XM_002460412.1

M91

*

*

    

404

dm blast

hypothetical protein

68/68(100 %)

1.00E-27

Sb03g004640

3

XM_002457229.1

M64

   

*

*

*

291

m blast

hypothetical protein

287/291(99 %)

6.00E-143

Sb03g035700

3

XM_002456357.1

M78

   

*

 

*

474

m blast

hypothetical protein

79/83(95 %)

4E-30

Sb04g025280

4

XM_002452369.1

M125

 

*

*

   

1048

dm blast

hypothetical protein

87/121(72 %)

9E-08

Sb05g000890

5

XM_002448838.1

M95

 

*

*

   

545a

dm blast

hypothetical protein

122/146(84 %)

2E-37

Sb06g014780

6

XM_002447689.1

M50

 

*

*

   

545a

dm blast

hypothetical protein

122/146(84 %)

2E-37

Sb06g014780

6

XM_002447689.1

M120

 

*

*

   

457

m blast

hypothetical protein

407/435(94 %)

0

Sb06g000450

6

XM_002445961.1

M57

    

*

***

60

blastn

hypothetical protein

20/21(95 %)

0.34

Sb06g000690

6

XM_002445988.1

M189

 

*

*

   

355

blastn

hypothetical protein

18/18(100 %)

1.2

Sb06g025190

6

XM_002448276.1

M46

*

*

    

371b

m blast

hypothetical protein

119/121(98 %)

4E-54

Sb07g020840

7

XM_002444326.1

M30

*

**

    

384b

m blast

hypothetical protein

119/121(98 %)

4E-54

Sb07g020840

7

XM_002444326.1

M71

 

*

*

   

425

blastn

hypothetical protein

59/73(81 %)

3.00E-09

Sb08g022800

8

XM_002443601.1

M58

 

**

*

  

*

566 c

m blast

hypothetical protein

354/371(95 %)

7E-168

Sb09g002270

9

XM_002439164.1

M54

 

**

*

  

*

566 c

m blast

hypothetical protein

354/371(95 %)

7E-168

Sb09g002270

9

XM_002439164.1

M168

   

*

*

 

384

m blast

hypothetical protein

368/384(96 %)

7E-176

Sb09g015250

9

XM_002440847.1

M59

 

*

*

   

468

blastn

hypothetical protein

23/25(92 %)

0.13

Sb09g007900

9

XM_002439437.1

M193

 

*

**

   

604

blastn

hypothetical protein

18/18(100 %)

2.1

Sb09g014225

9

XM_002439535.1

M153

    

*

*

753

dm blast

hypothetical protein

85/87(98 %)

6E-35

Sb10g006890

10

XM_002437984.1

M14

    

*

*

427

blastn

hypothetical protein

23/24(96 %)

0.43

Sb10g010770

10

XM_002438218.1

M188

 

*

  

*

*

578

blastn

hypothetical protein

29/34(85 %)

0.59

Sb10g023910

10

XM_002437224.1

M45

   

**

 

*

749

blastn

alpha kafirin

79/98(81 %)

3.00E-18

unassigned

 

Y17556.1

M181

   

**

 

*

749

blastn

alpha kafirin

46/46(100 %)

5E-16

unassigned

 

Y17556.1

M108

*

 

*

   

488

m blast

alpha kafirin

61/62(98 %)

7E-23

unassigned

 

Y17556.1

M173

 

*

  

*

*

662

blastn

alpha kafirin

39/41(95 %)

5E-09

unassigned

 

Y17556.1

M5

    

*

*

na

       

M86

    

*

*

na

       

M32

 

*

*

   

na

       

M198

*

 

*

   

na

       

M197

**

*

    

na

       

M203

*

*

    

na

       
  1. na not available sequence
  2. FDR P-values: * p < 0.01; ** p < 0.001; and *** p < 0.0001
  3. a, b, cindicate same nucleotide sequence for two diferent DArT marker
  4. dmegablast (m blast), discontiduous mega blast (dm blast) or blastn
  5. Data in bold = more significant alignment i.e. larger sequence size with high identity and lower Expected value