Photosynthesis
|
1
|
gi|407970998
|
Chlorophyll a-b binding protein 4, Solanum lycopersicum
|
135
|
13
|
2
|
28.98/5.33
|
0.31* ± 0.15
|
0.45* ± 0.35
|
0.22* ± 0.13
|
0.18* ± 0.09
|
2
|
gi|115813
|
Chlorophyll a-b binding protein 8, Solanum lycopersicum
|
212
|
15
|
5
|
29.34/8.96
|
1.09 ± 0.22
|
0.45* ± 0.35
|
0.25* ± 0.06
|
0.90 ± 0.33
|
3
|
gi|460405507
|
Chlorophyll a-b binding protein 8, Solanum lycopersicum
|
81
|
4
|
1
|
29.26/8.65
|
1.34 ± 0.25
|
1.78 ± 0.30
|
0.46* ± 0.03
|
0.36* ± 0.13
|
4
|
gi|460375240
|
Oxygen-evolving enhancer protein 1, Solanum lycopersicum
|
273
|
10
|
2
|
35.15/5.91
|
0.84 ± 0.07
|
0.18* ± 0.01
|
0.31* ± 0.04
|
1.49 ± 0.38
|
5
|
gi|460372520
|
Oxygen-evolving enhancer protein 1, Solanum lycopersicum
|
99
|
19
|
2
|
35.48/5.84
|
1.93 ± 0.19
|
0.18* ± 0.01
|
2.21* ± 0.44
|
10.57* ± 0.52
|
6
|
gi|460408969
|
Rubisco accumulation factor 1, Solanum lycopersicum
|
119
|
9
|
3
|
50.46/5.10
|
5.36* ± 0.28
|
1.85 ± 0.28
|
0.77 ± 0,29
|
2.18* ± 0.39
|
7
|
gi|460401823
|
Ribulose bisphosphate carboxylase/oxygenase activase 1, Solanum lycopersicum
|
56
|
3
|
1
|
49.05/8.15
|
0.09* ± 0.04
|
0.57 ± 0.12
|
6.75* ± 0.18
|
1.07 ± 0.29
|
8
|
gi|723739979
|
Ribulose bisphosphate carboxylase/oxygenase activase, Solanum lycopersicum
|
285
|
11
|
3
|
50.97/8.76
|
0.88 ± 0.20
|
0.38* ± 0.30
|
0.07* ± 0.05
|
0.16* ± 0.01
|
9
|
gi|1778414
|
Ribulose 1,5-bisphosphate carboxylase/oxygenase activase, Oryza sativa
|
126
|
7
|
2
|
48.06/5.85
|
0.39* ± 0.04
|
0.78 ± 0.16
|
3.45* ± 0.40
|
1.73 ± 0.01
|
10
|
gi|100380
|
Ribulose bisphosphate carboxylase activase, Nicotiana tabacum
|
103
|
7
|
1
|
26.08/5.01
|
0.05* ± 0.01
|
0.03* ± 0.02
|
3.25* ± 0.44
|
5.57* ± 0.43
|
11
|
gi|488453358
|
Ribulose 1,5-bisphosphate carboxylase, Solanum lycopersicum
|
171
|
6
|
3
|
48.57/6.71
|
1.22 ± 0.14
|
43.48* ± 0.38
|
0.04* ± 0.01
|
0.01* ± 0,01
|
12
|
gi|488453358
|
Ribulose 1,5-bisphosphate carboxylase, Solanum lycopersicum
|
313
|
13
|
5
|
48.57/6.71
|
1.58 ± 0.11
|
23.71* ± 0.28
|
0.06* ± 0.01
|
0.02* ± 0.01
|
13
|
gi|488453358
|
Ribulose 1,5-bisphosphate carboxylase, Solanum lycopersicum
|
62
|
4
|
2
|
48.57/6.71
|
1.37 ± 0.22
|
4.53* ± 0.25
|
0.05* ± 0.01
|
0.05* ± 0.01
|
14
|
gi|488453358
|
Ribulose 1,5-bisphosphate carboxylase, Solanum lycopersicum
|
124
|
8
|
3
|
48.57/6.71
|
0.83 ± 0.15
|
1.89 ± 0.20
|
0.09* ± 0.01
|
0.04* ± 0.01
|
15
|
gi|1293000
|
Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit, Cheirodendron trigynum
|
200
|
6
|
3
|
52.90/6.31
|
0.63 ± 0.04
|
1.18 ± 0.20
|
0.10* ± 0.05
|
0.06* ± 0.01
|
16
|
gi|168282
|
Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit, Lactoris fernandeziana
|
281
|
16
|
4
|
44.16/6.33
|
0.19* ± 0.02
|
0.28* ± 0.02
|
2.60* ± 0.39
|
1.76 ± 0.24
|
17
|
gi|21069067
|
Ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit, Asplenium jahandiezii
|
60
|
4
|
1
|
39.38/7.31
|
1.00 ± 0.26
|
0.29* ± 0.10
|
0.02* ± 0.01
|
0.09* ± 0.08
|
18
|
gi|460379814
|
RubisCO large subunit-binding protein subunit beta, Solanum lycopersicum
|
203
|
10
|
4
|
64.53/5.46
|
5.11* ± 0.34
|
2.87* ± 0.15
|
1.26 ± 0.06
|
2.24* ± 0.19
|
19
|
gi|460366131
|
RubisCO large subunit-binding protein subunit beta, Solanum lycopersicum
|
53
|
4
|
2
|
63.24/5.72
|
1.15 ± 0.36
|
2.81* ± 0.25
|
0.69 ± 0.08
|
0.28* ± 0.09
|
20
|
gi|92087012
|
Ribulose bisphosphate carboxylase large chain OS, Solanum lycopersicum
|
65
|
6
|
3
|
53.43/6.55
|
0.77 ± 0.12
|
10.02* ± 0.24
|
0.09* ± 0.01
|
0.01* ± 0.01
|
21
|
gi|92087012
|
Ribulose bisphosphate carboxylase large chain OS, Solanum lycopersicum
|
121
|
14
|
6
|
53.43/6.55
|
1.18 ± 0.07
|
32.57* ± 0.19
|
0.08* ± 0.01
|
0.01* ± 0.01
|
22
|
gi|460375527
|
Ferredoxin–NADP reductase, leaf-type isozyme, Solanum lycopersicum
|
118
|
13
|
3
|
40.90/8.67
|
0.28* ± 0.07
|
0.93 ± 0.47
|
0.42* ± 0.10
|
0.14* ± 0.02
|
23
|
gi|460373374
|
FerredoxinvNADP reductase, leaf-type isozyme, Solanum lycopersicum
|
299
|
20
|
5
|
40.77/8.37
|
0.82 ± 0.07
|
0.61 ± 0.07
|
0.48* ± 0.02
|
0.65 ± 0.05
|
24
|
gi|350537679
|
Carbonic anhydrase, Solanum lycopersicum
|
278
|
17
|
4
|
34.85/6.67
|
1.45 ± 0.12
|
3.21* ± 0.27
|
0.85 ± 0.12
|
0.38* ± 0.05
|
25
|
gi|350537679
|
Carbonic anhydrase, Solanum lycopersicum
|
98
|
5
|
1
|
34.85/6.67
|
0.65 ± 0.15
|
0.35* ± 0.03
|
1.53 ± 0.18
|
2.81* ± 0.23
|
26
|
gi|460389468
|
Protein TIC 62, Solanum lycopersicum
|
313
|
13
|
5
|
52.96/7.66
|
1.02 ± 0.14
|
0.20* ± 0.11
|
0.13* ± 0.04
|
0.70 ± 0.17
|
27
|
gi|460372959
|
Peptidyl-prolyl cis-trans isomerase CYP38, Solanum lycopersicum
|
185
|
17
|
5
|
49.54/5.00
|
0.92 ± 0.12
|
1.61 ± 0.38
|
0.26* ± 0.05
|
0.15* ± 0.04
|
Carbohydrate metabolism and energy
|
28
|
gi|469517896
|
Glyceraldehyde-3-phosphate dehydrogenase, Atropa belladonna
|
101
|
10
|
4
|
34.16/6.04
|
0.88 ± 0.11
|
0.98 ± 0.29
|
0.46* ± 0.03
|
0.44* ± 0.13
|
29
|
gi|460414390
|
ATP synthase delta chain, Solanum lycopersicum
|
166
|
6
|
4
|
27.32/8.90
|
0.49* ± 0.17
|
1.62 ± 0.23
|
0.38* ± 0.05
|
0.11* ± 0.03
|
30
|
gi|303279681
|
Aryl-al/cohol dehydrogenase related protein, Micromonas pusilla
|
54
|
3
|
1
|
41.07/8.65
|
0.53 ± 0.11
|
1.05 ± 0.21
|
2.49* ± 0.35
|
1.28 ± 0.19
|
31
|
gi|460397188
|
Thiamine thiazole synthase, Solanum lycopersicum
|
142
|
14
|
4
|
37.68/5.42
|
0.30* ± 0.21
|
3.06* ± 0.09
|
2.25* ± 0.07
|
0.23* ± 0.17
|
32
|
gi|460365268
|
Biotin carboxylase 1, Solanum lycopersicum
|
413
|
13
|
6
|
59.08/6.52
|
0.68 ± 0.27
|
1.51 ± 0.26
|
0.82 ± 0.08
|
0.37* ± 0.13
|
33
|
gi|723747143
|
Aconitate hydratase, Solanum lycopersicum
|
218
|
5
|
4
|
107.83/6.52
|
67.86* ± 0.19
|
3.13* ± 0.22
|
0.26* ± 0.02
|
5.77* ± 0.85
|
34
|
gi|350538543
|
Succinic semialdehyde reductase isofom 2, Solanum lycopersicum
|
123
|
7
|
2
|
38.94/8.50
|
2.01* ± 0.26
|
2.52* ± 0.10
|
1.24 ± 0.09
|
1.06 ± 0.93
|
35
|
gi|460408278
|
Enolase-like, Solanum lycopersicum
|
207
|
11
|
4
|
48.21/5.99
|
3.37* ± 0.29
|
4.38* ± 0.04
|
1.49 ± 0.09
|
1.14 ± 0.14
|
36
|
gi|460415839
|
Probable ATP synthase 24 kDa subunit, Solanum lycopersicum
|
78
|
5
|
1
|
27.75/8.69
|
0.44* ± 0.08
|
0.49* ± 0.12
|
1.31 ± 0.09
|
1.02 ± 0.28
|
37
|
gi|460373820
|
ATP synthase gamma chain, Solanum lycopersicum
|
167
|
12
|
3
|
41.75/8.15
|
1.93 ± 0.33
|
3.80* ± 0.24
|
0.09* ± 0.01
|
0.05* ± 0.01
|
38
|
gi|460365435
|
Isocitrate dehydrogenase [NADP], Solanum lycopersicum
|
172
|
12
|
4
|
47.00/6.35
|
1.05 ± 0.22
|
0.27* ± 0.12
|
0.21* ± 0.03
|
0.86 ± 0.14
|
39
|
gi|350535679
|
Cytosolic NADP-malic enzyme, Solanum lycopersicum
|
167
|
6
|
3
|
64.63/5.71
|
2.04* ± 0.20
|
1.20 ± 0.14
|
0.48* ± 0.07
|
0.49* ± 0.20
|
40
|
gi|31088232
|
Chitinase, Solanum lycopersicum
|
123
|
18
|
7
|
28.05/5.93
|
0.82 ± 0.11
|
0.30* ± 0.03
|
1.51 ± 0.31
|
4.12* ± 0.10
|
Proteometabolism
|
41
|
gi|350535160
|
Wound-inducible carboxypeptidase precursor, Solanum lycopersicum
|
191
|
5
|
2
|
56.04/5.84
|
1.14 ± 0.07
|
0.78 ± 0.05
|
3.62* ± 0.30
|
5.27* ± 0.22
|
42
|
gi|350535160
|
Wound-inducible carboxypeptidase precursor, Solanum lycopersicum
|
177
|
5
|
3
|
56.04/5.84
|
1.07 ± 0.17
|
0.48* ± 0.02
|
2.72* ± 0.19
|
6.05* ± 0.30
|
43
|
gi|350534564
|
26S protease regulatory subunit 6A homolog, Solanum lycopersicum
|
253
|
17
|
6
|
47.70/4.94
|
1.18 ± 0.05
|
0.78 ± 0.25
|
0.20* ± 0.07
|
0.30* ± 0.04
|
44
|
gi|460393754
|
26S protease regulatory subunit 6B homolog, Solanum lycopersicum
|
198
|
7
|
2
|
46.80/5.63
|
1.24 ± 0.40
|
0.38* ± 0.13
|
0.33* ± 0.23
|
0.91 ± 0.34
|
45
|
gi|460400419
|
Elongation factor G, Solanum lycopersicum
|
258
|
11
|
5
|
86.79/5.45
|
3.75* ± 0.31
|
0.53 ± 0.02
|
0.47* ± 0.01
|
3.29* ± 0.39
|
46
|
gi|460415494
|
Eukaryotic initiation factor 4A-2, Solanum lycopersicum
|
370
|
18
|
7
|
47.10/5.46
|
1.82 ± 0.06
|
1.72 ± 0.15
|
0.35* ± 0.02
|
0.37* ± 0.02
|
47
|
gi|460399092
|
Eukaryotic initiation factor 4A-2, Solanum lycopersicum
|
304
|
13
|
4
|
47.14/5.54
|
1.22 ± 0.22
|
2.73* ± 0.07
|
0.49* ± 0.22
|
0.22* ± 0.05
|
48
|
gi|460391817
|
Elongation factor TuB, Solanum lycopersicum
|
125
|
5
|
2
|
56.29/6.69
|
0.62 ± 0.16
|
4.33* ± 0.23
|
2.45* ± 0.23
|
0.34* ± 0.03
|
49
|
gi|460399098
|
Elongation factor 2 isoform X1, Solanum lycopersicum
|
248
|
7
|
4
|
94.97/5.84
|
1.35 ± 0.24
|
3.39* ± 0.23
|
3.06* ± 0.11
|
1.22 ± 0.19
|
50
|
gi|460396224
|
Eukaryotic translation initiation factor 3 subunit K, Solanum lycopersicum
|
134
|
11
|
2
|
26.55/5.28
|
0.46* ± 0.03
|
1.12 ± 0.17
|
2.80* ± 0.26
|
1.15 ± 0.12
|
51
|
gi|460391351
|
Cell division cycle protein 48 homolog, Solanum lycopersicum
|
172
|
9
|
5
|
90.15/5.10
|
24.39* ± 0.39
|
1.57 ± 0.13
|
0.38* ± 0.04
|
5.90* ± 0.81
|
52
|
gi|460411520
|
Cell division cycle protein 48 homolog, Solanum lycopersicum
|
138
|
5
|
3
|
90.25/5.20
|
5.85* ± 0.22
|
0.91 ± 0.08
|
1.09 ± 0.04
|
7.00* ± 0.60
|
53
|
gi|2492530
|
Leucine aminopeptidase 2, Solanum lycopersicum
|
79
|
8
|
3
|
60.08/8.18
|
4.80* ± 0.15
|
2.68* ± 0.29
|
0.81 ± 0.07
|
1.46 ± 0.07
|
54
|
gi|350536267
|
Subtilisin-like protease precursor, Solanum lycopersicum
|
301
|
5
|
3
|
79.57/6.25
|
0.24* ± 0.02
|
0.07* ± 0.01
|
4.17* ± 0.29
|
14.46* ± 0.40
|
55
|
gi|460381101
|
28 kDa ribonucleoprotein, Solanum lycopersicum
|
100
|
8
|
3
|
32.69/4.70
|
1.11 ± 0.19
|
1.15 ± 0.31
|
2.17* ± 0.70
|
2.05* ± 0.25
|
Amino acid metabolism
|
56
|
gi|723717714
|
Phosphoglycerate kinase, Solanum lycopersicum
|
275
|
17
|
6
|
42.26/5.78
|
1.24 ± 0.46
|
0.47* ± 0.02
|
0.42* ± 0.02
|
1.11 ± 0.41
|
57
|
gi|460404838
|
Adenosylhomocysteinase, Solanum lycopersicum
|
119
|
12
|
4
|
53.59/5.57
|
1.10 ± 0.34
|
0.53 ± 0.16
|
0.21* ± 0.06
|
0.45* ± 0.19
|
58
|
gi|460395681
|
Ketol-acid reductoisomerase, Solanum lycopersicum
|
68
|
5
|
2
|
64.19/6.31
|
0.83 ± 0.40
|
0.34* ± 0.20
|
0.39* ± 0.09
|
0.97 ± 0.21
|
59
|
gi|460415192
|
S-adenosylmethionine synthase 2, Solanum lycopersicum
|
207
|
7
|
2
|
43.51/5.41
|
2.09* ± 0.26
|
2.04* ± 0.07
|
0.64 ± 0.06
|
0.86 ± 0.09
|
60
|
gi|460399143
|
Glycine dehydrogenase (decarboxylating), Solanum lycopersicum
|
192
|
9
|
6
|
114.02/6.69
|
1.90 ± 0.14
|
1.39 ± 0.08
|
4.02* ± 0.25
|
5.51* ± 0.19
|
61
|
gi|460399143
|
Glycine dehydrogenase (decarboxylating), Solanum lycopersicum
|
153
|
7
|
5
|
114.02/6.69
|
3.80* ± 0.19
|
5.08* ± 0.31
|
6.81* ± 0.38
|
5.09* ± 0.21
|
62
|
gi|460370413
|
Glycine dehydrogenase, Solanum lycopersicum
|
183
|
9
|
3
|
42.52/6.56
|
0.28* ± 0.02
|
12.57* ± 0.28
|
3.33* ± 0.16
|
0.07* ± 0.02
|
63
|
gi|170458
|
Threonine deaminase, partial, Solanum lycopersicum
|
194
|
9
|
4
|
65.05/5.26
|
1.01 ± 0.01
|
0.82 ± 0.04
|
5.90* ± 0.09
|
7.29* ± 0.29
|
64
|
gi|170458
|
Threonine deaminase, partial, Solanum lycopersicum
|
443
|
18
|
7
|
65.05/5.26
|
0.22* ± 0.01
|
0.40* ± 0.02
|
5.28* ± 0.62
|
2.96* ± 0.28
|
65
|
gi|170458
|
Threonine deaminase, partial, Solanum lycopersicum
|
175
|
7
|
3
|
65.05/5.26
|
0.97 ± 0.01
|
0.55 ± 0.02
|
4.35* ± 0.03
|
7.62* ± 0.14
|
66
|
gi|460398434
|
Cysteine synthase, Solanum lycopersicum
|
317
|
20
|
4
|
41.26/5.41
|
0.99 ± 0.02
|
6.39* ± 0.21
|
2.11* ± 0.22
|
0.33* ± 0.04
|
67
|
gi|460404180
|
Cysteine synthase, Solanum lycopersicum
|
274
|
17
|
5
|
34.34/5.93
|
1.89 ± 0.13
|
0.63 ± 0.38
|
0.33* ± 0.16
|
1.09 ± 0.19
|
Chaperones
|
68
|
gi|460389504
|
Protein disulfide-isomerase-like, Solanum lycopersicum
|
82
|
6
|
2
|
55.11/4.81
|
0.53 ± 0.02
|
0.55 ± 0.01
|
3.51* ± 0.28
|
3.39* ± 0.22
|
69
|
gi|460395973
|
Heat shock protein 83, Solanum lycopersicum
|
76
|
1
|
1
|
90.77/5.23
|
0.96 ± 0.04
|
1.99 ± 0.03
|
19.73* ± 0.24
|
9.53* ± 0.23
|
70
|
gi|460395973
|
Heat shock protein 83, Solanum lycopersicum
|
193
|
3
|
3
|
90.77/5.23
|
1.24 ± 0.23
|
3.10* ± 0.37
|
2.07* ± 0.26
|
0.82 ± 0.07
|
71
|
gi|762844
|
Hsc70, Solanum lycopersicum
|
115
|
4
|
2
|
71.87/5.18
|
5.38* ± 0.40
|
0.60 ± 0.15
|
1.04 ± 0.28
|
9.20* ± 0.21
|
72
|
gi|170386
|
Glucose-regulated protein 78, Solanum lycopersicum
|
211
|
12
|
3
|
41.32/8.51
|
2.45* ± 0.40
|
0.73 ± 0.14
|
1.31 ± 0.26
|
4.32* ± 0.41
|
73
|
gi|145341034
|
AAA-metalloprotease FtsH, Ostreococcus lucimarinus
|
131
|
6
|
4
|
67.77/5.23
|
0.92 ± 0.05
|
0.63 ± 0.29
|
0.44* ± 0.01
|
0.75 ± 0.32
|
Signal transduction
|
74
|
gi|1168191
|
14-3-3 protein 4 OS, Solanum lycopersicum
|
58
|
25
|
4
|
29.40/4.69
|
0.78 ± 0.33
|
0.67 ± 0.29
|
0.10* ± 0.04
|
0.11* ± 0.05
|
75
|
gi|3041662
|
14-3-3 protein 3, Solanum lycopersicum
|
165
|
12
|
2
|
29.40/4.74
|
0.56 ± 0.23
|
1.33 ± 0.24
|
0.21* ± 0.04
|
0.08* ± 0.02
|
76
|
gi|460405902
|
Plasma membrane-associated cation-binding protein 1, Solanum lycopersicum
|
95
|
6
|
1
|
21.98/5.03
|
1.71 ± 0.37
|
0.99 ± 0.19
|
0.20* ± 0.04
|
0.34* ± 0.04
|
77
|
gi|590715109
|
Transducin family protein/WD-40 repeat family protein isoform 1, Theobroma cacao
|
57
|
2
|
1
|
87.16/6.40
|
0.82 ± 0.01
|
0.18* ± 0.01
|
2.87* ± 0.03
|
12.76* ± 0.11
|
78
|
gi|460393840
|
Proliferation-associated protein 2G4-like, Solanum lycopersicum
|
134
|
7
|
2
|
43.07/6.41
|
2.16* ± 0.17
|
0.59 ± 0.15
|
0.27* ± 0.09
|
0.97 ± 0.19
|
79
|
gi|525314284
|
Hop-interacting protein THI113, Solanum lycopersicum
|
117
|
10
|
2
|
37.34/5.82
|
0.93 ± 0.14
|
0.11* ± 0.07
|
0.24* ± 0.18
|
1.96 ± 0.10
|
Detoxification and antioxidation
|
80
|
gi|350536897
|
Cytosolic ascorbate peroxidase 1, Solanum lycopersicum
|
113
|
14
|
2
|
27.73/5.61
|
1.54 ± 0.26
|
0.66 ± 0.06
|
0.42* ± 0.09
|
0.96 ± 0.09
|
81
|
gi|350536897
|
Cytosolic ascorbate peroxidase 1, Solanum lycopersicum
|
115
|
7
|
1
|
27.73/5.61
|
7.20* ± 0.13
|
7.42* ± 0.32
|
6.03* ± 0.16
|
5.85* ± 0.07
|
82
|
gi|350539113
|
Ascorbate peroxidase, Solanum lycopersicum
|
141
|
5
|
2
|
42.38/8.65
|
1.90 ± 0.20
|
0.75 ± 0.18
|
0.32* ± 0.04
|
0.81 ± 0.07
|
83
|
gi|460373807
|
Putative lactoylglutathione lyase, Solanum lycopersicum
|
126
|
15
|
5
|
32.95/5.95
|
0.82 ± 0.22
|
0.17* ± 0.07
|
0.44* ± 0.21
|
2.05* ± 0.24
|
84
|
gi|50400860
|
Monodehydroascorbate reductase, Solanum lycopersicum
|
255
|
17
|
5
|
47.12/5.77
|
0.85 ± 0.07
|
0.49* ± 0.17
|
0.40* ± 0.18
|
0.69 ± 0.16
|
85
|
gi|251895
|
Polyphenol oxidase, Solanum lycopersicum
|
169
|
7
|
5
|
66.83/6.61
|
1.96 ± 0.06
|
2.87* ± 0.04
|
15.32* ± 0.10
|
10.49* ± 0.42
|
86
|
gi|460397526
|
Heme-binding protein 2, Solanum lycopersicum
|
183
|
17
|
3
|
26.12/7.59
|
0.84 ± 0.08
|
0.82 ± 0.05
|
4.29* ± 0.25
|
4.41* ± 0.18
|