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Table 3 Complementary expressions between miRNAs and their targets in flax under saline, alkaline, and saline-alkaline stresses

From: Identification and characterization of miRNAs and targets in flax (Linum usitatissimum) under saline, alkaline, and saline-alkaline stresses

MiRNAs Small RNA sequencing Target gene Annotation Degradome sequencing DGE sequencing
AS AS2 NSS Position Lignment score Category AS AS2 NSS
lus-miR156g/a Down Down Down Lus10000257 Tetratricopeptide repeat (TPR)-like superfamily protein 761 4.5 4 Up Up Up
lus-miR159b Down Down Down Lus10010495 Cystatin/monellin superfamily protein 335 4.5 3 Up Up Up
lus-miR160a/b/d/e/f/h/i/j Up Up Down Lus10041268 Transducin/WD40 repeat-like superfamily protein 1014 4 2 Down Down Up
lus-miR162a/b Down Down Down Lus10015483 Heat shock protein 70 (Hsp 70) family protein 1243 4.5 2 Up Up Up
lus-miR164a/b/c/d/e Down Up Down Lus10006635 ARM repeat superfamily protein 153 4 4 Up Down Up
lus-miR166a/c/d/g/h/j Down Down Down Lus10020493 Pathogenesis-related gene 1 220 4 2 Up Up Up
lus-miR167a Down Down Down Lus10014324 G-box binding factor 1 679 3.5 2 Up Up Up
lus-miR168a/b Down Down Down Lus10000074 Methionine gamma-lyase 469 4.5 4 Up Up Up
lus-miR169a/d Up Down Down Lus10014674 Transducin/WD40 repeat-like superfamily protein 638 4 4 Down Up Up
lus-miR169e/i Down Down Down Lus10006846 Profilin 5 96 4.5 4 Up Up Up
lus-miR169g/l Up Down Up Lus10030904 Alpha/beta-Hydrolases superfamily protein 755 4.5 4 Down Up Down
lus-miR171b/c/e Down Down Down Lus10009876 UDP-glucosyl transferase 85A3 952 4 4 Up Up Up
lus-miR171d Up Down Down Lus10017991 Jasmonate-zim-domain protein 3 594 4.5 2 Down Up Up
lus-miR172a/b/c/d/f/h Down Down Down Lus10001322 Deoxyxylulose-5-phosphate synthase 1796 4 4 Up Up Up
lus-miR319b Down Down Down Lus10009442 O-methyltransferase family protein 502 4 4 Up Up Up
lus-miR390a/b/c/d Down Down Down Lus10015906 Purine permease 3 857 4.5 4 Up Up Up
lus-miR393a/b/c/d Up Up Down Lus10040438 F-box family protein 1620 3.5 4 Down Down Up
lus-miR394a/b Up Up Down Lus10018337 Pyruvate dehydrogenase kinase 536 4.5 2 Down Down Up
lus-miR395a/b/c/d Down Down Down Lus10006629 ATP sulfurylase 1 339 2.5 0 Up Up Up
lus-miR396a/c Down Down Down Lus10001321 Xylose isomerase family protein 648 3.5 2 Up Up Up
lus-miR397a Up Up Down Lus10004434 REF4-related 1 1875 4.5 4 Down Down Up
lus-miR397b Down Up Up Lus10001002 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 581 4.5 4 Up Down Down
lus-miR398a Up Up Up Lus10016155 Copper/zinc superoxide dismutase 2 449 4 0 Down Down Down
lus-miR398b/c/d/e Down Down Down Lus10003315 Myosin family protein with Dil domain 4406 4.5 2 Up Up Up
lus-miR399b/d Down Up Down Lus10019360 Trigalactosyldiacylglycerol2 323 4.5 4 Up Down Up
lus-miR399f/g Up Up Up Lus10003060 Cofactor-independent phosphoglycerate mutase 1097 4 4 Down Down Down
lus-miR408a Up Up Up Lus10003138 Cyclophilin 20-2 860 4.5 2 Down Down Down
lus-miR530a/b Up Up Down Lus10001902 WRKY family transcription factor 490 4.5 2 Down Down Up
lus-miR828a Down Up Up Lus10013640 Ribosomal protein L3 family protein 570 4.5 4 Up Down Down
  1. Abbreviations: ARM Armadillo, AS Alkaline stress, AS2 Alkaline-salt stress, ATP Adenosine-triphosphate, CK Control, DGE Digital gene expression, Hsp Heat shock protein, Lus Linum usitatissimum, MiRNA MicroRNA, NSS Neutral salt stress, REF Reduced epidermal fluorescenc, TPR Tetratricopeptide repeat, UDP Uridine diphosphate