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Table 2 Summary of significant differential expressed genes known miRNA under saline, alkaline, and saline-alkaline stresses

From: Identification and characterization of miRNAs and targets in flax (Linum usitatissimum) under saline, alkaline, and saline-alkaline stresses

MiR-name

Fold-change(log2)

Target

Anotation

AS

ASS

NSS

lus-miR159c

-

-

−1.0931792↓

Lus10036103[a], Lus10016550, Lus10027189, Lus10017946, Lus10008685[a], Lus10028176, Lus10013688, Lus10035275, Lus10026142[a], Lus10009780, Lus10026787[a]

Myb domain protein, Mitochondrial transcription termination factor family protein, Transcription regulators

lus-miR160a/e/f

-

1.20840613↑

−3.66411747↓

Lus10024753, Lus10024754, Lus10023519, Lus10019940, Lus10026510, Lus10016090, Lus10040403, Lus10009770, Lus10021467

Auxin response factor

lus-miR160b/d

-

1.20719184↑

−3.66660396↓

lus-miR160j

-

1.20846291↑

lus-miR160h/i

-

1.20203167↑

−3.69976116↓

lus-miR169c

-

−1.13471672↓

-

Lus10017991, Lus10041986,

Jasmonate-zim-domain protein, GRAS family transcription factor

lus-miR169e/i

-

−1.05752449↓

-

lus-miR171j

-

-

−1.02479034↓

Lus10024029, Lus10041721, Lus10004353, Lus10028934

GRAS family transcription factor

lus-miR319a

-

-

−1.46989392↓

Lus10036103[a], Lus10008685[a], Lus10026142[a], Lus10026787[a]

Myb domain protein

lus-miR393a/c

-

1.12123117↑

-

Lus10031991, Lus10035160

Auxin signaling F-box

lus-miR393b/d

 

1.00414957↑

-

lus-miR394a

-

2.65759041↑

−3.63085489↓

Lus10000973, Lus10029731, Lus10011354, Lus10022009, Lus10028656, Lus10028656, Lus10006975, Lus10015775, Lus10001312, Lus10003117, Lus10037030,

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, Galactose oxidase/kelch repeat superfamily protein, Signal transduction histidine kinase, FGGY family of carbohydrate kinase, Jasmonate-zim-domain protein

lus-miR394b

-

2.77702791↑

−3.82176614↓

lus-miR398a

2.51091239↑

2.69813582↑

-

-

-

lus-miR408a

1.71297796↑

1.63630636↑

-

Lus10018938, Lus10020012, Lus10028640, Lus10028641

Plantacyanin, Chloroplast import apparatus

  1. Abbreviations: AS Alkaline stress, AS2 Alkaline-salt stress, CK Control, Lus Linum usitatissimum, NSS Neutral salt stress, ↑, Upregulated; ↓, Downregulated; [a], the same target genes of lus-miR159c and lus-miR319a