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Table 2 Summary of significant differential expressed genes known miRNA under saline, alkaline, and saline-alkaline stresses

From: Identification and characterization of miRNAs and targets in flax (Linum usitatissimum) under saline, alkaline, and saline-alkaline stresses

MiR-name Fold-change(log2) Target Anotation
AS ASS NSS
lus-miR159c - - −1.0931792↓ Lus10036103[a], Lus10016550, Lus10027189, Lus10017946, Lus10008685[a], Lus10028176, Lus10013688, Lus10035275, Lus10026142[a], Lus10009780, Lus10026787[a] Myb domain protein, Mitochondrial transcription termination factor family protein, Transcription regulators
lus-miR160a/e/f - 1.20840613↑ −3.66411747↓ Lus10024753, Lus10024754, Lus10023519, Lus10019940, Lus10026510, Lus10016090, Lus10040403, Lus10009770, Lus10021467 Auxin response factor
lus-miR160b/d - 1.20719184↑ −3.66660396↓
lus-miR160j - 1.20846291↑
lus-miR160h/i - 1.20203167↑ −3.69976116↓
lus-miR169c - −1.13471672↓ - Lus10017991, Lus10041986, Jasmonate-zim-domain protein, GRAS family transcription factor
lus-miR169e/i - −1.05752449↓ -
lus-miR171j - - −1.02479034↓ Lus10024029, Lus10041721, Lus10004353, Lus10028934 GRAS family transcription factor
lus-miR319a - - −1.46989392↓ Lus10036103[a], Lus10008685[a], Lus10026142[a], Lus10026787[a] Myb domain protein
lus-miR393a/c - 1.12123117↑ - Lus10031991, Lus10035160 Auxin signaling F-box
lus-miR393b/d   1.00414957↑ -
lus-miR394a - 2.65759041↑ −3.63085489↓ Lus10000973, Lus10029731, Lus10011354, Lus10022009, Lus10028656, Lus10028656, Lus10006975, Lus10015775, Lus10001312, Lus10003117, Lus10037030, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, Galactose oxidase/kelch repeat superfamily protein, Signal transduction histidine kinase, FGGY family of carbohydrate kinase, Jasmonate-zim-domain protein
lus-miR394b - 2.77702791↑ −3.82176614↓
lus-miR398a 2.51091239↑ 2.69813582↑ - - -
lus-miR408a 1.71297796↑ 1.63630636↑ - Lus10018938, Lus10020012, Lus10028640, Lus10028641 Plantacyanin, Chloroplast import apparatus
  1. Abbreviations: AS Alkaline stress, AS2 Alkaline-salt stress, CK Control, Lus Linum usitatissimum, NSS Neutral salt stress, ↑, Upregulated; ↓, Downregulated; [a], the same target genes of lus-miR159c and lus-miR319a