Table 1 Genomic repeat contents in genome assembly and after clustering in comparison

Repeat

Superfamily

family

Ty3-gypsy retrotransposons

7.61

43.15

4.37

33.09

−10.23

0.8–7.81

0.42–3.38

Beetle2

0.12

0.68

0.48

3.67

2.99

3.00

2.01

Beetle4

0.00

0.00

0.10

0.74

0.74

4.54

2.07

Beetle7

0.08

0.45

0.65

4.92

4.47

5.34

1.58

Total Beetle

0.50

2.84

1.25

9.50

6.66

3.0–5.34

0.75–2.07

Bongo3

2.02

11.45

1.90

14.42

2.96

0.28

0.63–1.62

Ty1- copia retrotransposons

4.56

25.86

4.99

37.82

11.97

0.11–0.49

0.8–2.37

Cotzilla

1.72

9.75

3.02

22.89

13.14

0.25–0.15

0.8–1.83

Salire

0.34

1.93

0.49

3.71

1.79

0.16

1.83

Patty

0.18

1.02

0.10

0.72

−0.30

0.11

2.37

ENV-like retrotransposons

4.05

22.96

2.14

16.22

−6.74

0.10–0.42

1.01–2.55

Elbe family

3.01

17.07

2.03

15.41

−1.66

0.10–0.42

1.01–2.43

LINE

3.77

21.38

0.14

1.06

−20.31

0.16

2.65

Tandem Repeat

3.31

18.77

11.15

84.52

65.75

0.08–3.22

0.33–3.61

pBV

0.27

1.53

6.17

46.75

45.21

2.34–3.22

0.87–1.2

pEV

0.17

0.96

3.58

27.14

26.17

0.13

2.6

Niobe

0.02

0.11

0.06

0.46

0.35

0.14

1.81

BvSat04

0.03

0.17

0.03

0.19

0.02

0.08

3.61

DNA transposons

2.07

11.74

3.93

29.79

18.05

0.11–1.02

0.25–3.15

Mutator

0.00

0.00

2.01

15.24

15.24

0.11–1.02

0.26–3.15

En/Spm (CACTA superfamily)

0.00

0.00

0.89

6.78

6.78

0.12–0.17

1.84–2.14

Helitron

0.56

3.18

0.10

0.76

−2.42

0.12

1.51

SINE

0.49

2.78

0.05

0.38

−2.40

0.31–0-64

0.37–0.46

rDNA

0.15

0.85

1.56

11.82

10.97

0.17–0.42

0.47–1.05

Pararetrovirus

0.06

0.34

0.09

0.68

0.34

0.5

1.55

Unclassified Dispersed Repeats

0.08

0.45

0.00

0.00

−0.45

-

-

plastid DNA

0.00

0.00

9.58

72.62

72.62

1.77–3.09

1.62–1.79

Unknown

6.28

35.61

4.69

35.55

−0.06

0.08–4.10

0.23–3.64