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Table 1 Distribution of small RNA reads among different categories in the sRNA library after dark, Blue light or UV-A treatment of Brassica rapa subsup. rapa cv. Tsuda

From: Exploring miRNAs involved in blue/UV-A light response in Brassica rapa reveals special regulatory mode during seedling development

Category

Dark treatment

Blue light treatment

UV-A light treatment

Unique sRNAs

Percent (%)

Total sRNAs

Percent (%)

Unique sRNAs

Percent (%)

Total sRNAs

Percent (%)

Unique sRNAs

Percent (%)

Total sRNAs

Percent (%)

Total

359,531

100 %

13,319,035

100 %

337,524

100%

12,727,958

100 %

298,261

100 %

1,105,3984

100 %

exon_

antisense

7952

2.21 %

151,963

1.14 %

7847

2.32%

117,444

0.92 %

7742

2.60 %

167,459

1.51 %

exon_

sense

7916

2.20 %

94,268

0.71 %

7545

2.24%

100,660

0.79 %

7259

2.43 %

79,121

0.72 %

intron_

antisense

12,312

3.42 %

183,025

1.37 %

11,345

3.36%

148,510

1.17 %

9167

3.07 %

146,973

1.33 %

intron_

sense

19,413

5.40 %

274,427

2.06 %

17,941

5.32%

250,571

1.97 %

13,782

4.62 %

183,113

1.66 %

miRNA

2,349

0.65 %

7,033,801

52.81 %

2,365

0.70%

5,365,249

42.15 %

2,395

0.80 %

4,042,699

36.57 %

rRNA

20,611

5.73 %

1,235,211

9.27 %

22,614

6.70%

864,612

6.79 %

35,121

11.78 %

1,412,822

12.78 %

snRNA

311

0.09 %

2,640

0.02 %

383

0.11%

3,134

0.02 %

394

0.13 %

3,668

0.03 %

snoRNA

189

0.05 %

1546

0.01 %

457

0.14%

7999

0.06 %

324

0.11 %

3431

0.03 %

tRNA

5715

1.59 %

1,137,537

8.54 %

10,857

3.22%

2,791,679

21.93 %

11,743

3.94 %

1,945,982

17.60 %

unann

282,763

78.65 %

3,204,617

24.06 %

256,170

75.90%

3,078,100

24.18 %

210,334

70.52 %

3,068,716

27.76 %