Skip to main content

Table 3 Overrepresented biological processes of transcript expression clusters

From: Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar “Svilena”

Cluster

GO term

GO term description

Number of transcripts

Enrichment p-value

1

GO:0006259

DNA metabolic process

90

<10-6

1

GO:0007049

cell cycle

78

<10-6

1

GO:0007018

microtubule-based movement

12

3 · 10-6

1

GO:0007067

mitotic nuclear division

12

3 · 10-6

1

GO:0040029

regulation of gene expression, epigenetic

44

1.1 · 10-5

1

GO:0043531

ADP binding

16

1.6 · 10-5

1

GO:0006275

regulation of DNA replication

12

7.9 · 10-5

1

GO:0003677

DNA binding

111

9.6 · 10-5

1

GO:0004803

transposase activity

8

1.86 · 10-4

1

GO:0006260

DNA replication

15

2.86 · 10-4

1

GO:0003774

motor activity

12

3.81 · 10-4

1

GO:0006418

tRNA aminoacylation for protein translation

10

7.99 · 10-4

1

GO:0008017

microtubule binding

6

9.88 · 10-4

1

GO:0006313

transposition, DNA-mediated

7

1.01 · 10-3

1

GO:0007131

reciprocal meiotic recombination

9

1.21 · 10-3

1

GO:0000911

cytokinesis by cell plate formation

11

1.69 · 10-3

1

GO:0006281

DNA repair

18

2.16 · 10-3

1

GO:0010332

response to gamma radiation

7

2.95 · 10-3

1

GO:0006261

DNA-dependent DNA replication

7

3.88 · 10-3

1

GO:0009909

regulation of flower development

13

4.31 · 10-3

1

GO:0003676

intracellular protein transport

77

5.49 · 10-3

1

GO:0006886

intercellular protein transport

19

6.59 · 10-3

1

GO:0016043

cellular component organization

140

8.09 · 10-3

5

GO:0009987

cellular process

205

5.18 · 10-4

5

GO:0019538

protein metabolic process

59

5.25 · 10-4

5

GO:0051603

proteolysis involved in cellular protein catabolic process

5

1.3 · 10-3

5

GO:0005839

proteasome core complex

5

1.75 · 10-3

5

GO:0006810

transport

91

3.29 · 10-3

9

GO:0009220

pyrimidine ribonucleotide biosynthetic process

7

1.1 · 10-4

9

GO:0003735

structural constituent of ribosome

12

3.43 · 10-4

9

GO:0006412

translation

25

3.16 · 10-3

9

GO:0006094

gluconeogenesis

5

3.68 · 10-3

9

GO:0009560

embryo sac egg cell differentiation

5

5.98 · 10-3

10

GO:0009058

biosynthetic process

85

<10-6

10

GO:0006629

lipid metabolic process

42

<10-6

10

GO:0009987

cellular process

138

4.7 · 10-5

10

GO:0009056

catabolic process

65

1.17 · 10-4

10

GO:0019748

secondary metabolic process

19

1.37 · 10-4

10

GO:0008152

metabolic process

62

2.1 · 10-4

10

GO:0005975

carbohydrate metabolic process

44

5.72 · 10-4

10

GO:0019538

protein metabolic process

39

1.17 · 10-3

10

GO:0006091

generation of precursor metabolites and energy

19

3.9 · 10-3

10

GO:0006519

cellular amino acid metabolic process

23

6.15 · 10-3

11

GO:0009058

biosynthetic process

60

<10-6

11

GO:0008152

metabolic process

45

<10-6

11

GO:0006629

lipid metabolic process

35

<10-6

11

GO:0005975

carbohydrate metabolic process

35

<10-6

11

GO:0006091

generation of precursor metabolites and energy

21

<10-6

11

GO:0019748

secondary metabolic process

17

<10-6

11

GO:0009056

catabolic process

42

1.8 · 10-5

11

GO:0005488

binding

51

1.09 · 10-4

11

GO:0006096

glycolytic process

7

2 · 10-4

11

GO:0009987

cellular process

77

2.75 · 10-4

11

GO:0006519

cellular amino acid metabolic process

17

5.5 · 10-4

11

GO:0015979

photosynthesis

7

6.02 · 10-4

11

GO:0055114

oxidation-reduction process

10

1.86 · 10-3

11

GO:0009628

response to abiotic stimulus

29

2.28 · 10-3

11

GO:0006950

response to stress

39

2.8 · 10-3