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Table 3 RepeatMasker analysis of the three B-located fragments

From: B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

  Position in query    Position in repeat
Score % div. % del. % ins. Query sequence Begin End (left) Matching repeat Repeat class/family (left) begin End Begin (left)
387 35.3 2.3 2.7 comp74447 330 588 (1045) Gypsy-196_ZM-I LTR/Gypsy (8584) 1386 1129
1980 27.5 2.4 3.7 comp74447 578 1446 (187) Gypsy-207_ZM-LTR LTR/Gypsy (2160) 1919 1102
291 35.5 4.1 4.6 comp30393 39 431 (53) PREM1A_ZM_LTR LTR/Copia (1836) 1572 1182
8117 4.7 2.6 0.6 comp75688 1974 3009 (241) Gypsy67-ZM_LTR LTR/Gypsy 2581 3638 (423)
  1. Score: Smith-Waterman score of the match
  2. % div.: % substitutions in matching region compared to the consensus
  3. % del.: % of bases opposite a gap in the query sequence (deleted bp)
  4. % ins.: % of bases opposite a gap in the repeat consensus (inserted bp)