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Table 3 RepeatMasker analysis of the three B-located fragments

From: B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)

 

Position in query

  

Position in repeat

Score

% div.

% del.

% ins.

Query sequence

Begin

End

(left)

Matching repeat

Repeat class/family

(left) begin

End

Begin (left)

387

35.3

2.3

2.7

comp74447

330

588

(1045)

Gypsy-196_ZM-I

LTR/Gypsy

(8584)

1386

1129

1980

27.5

2.4

3.7

comp74447

578

1446

(187)

Gypsy-207_ZM-LTR

LTR/Gypsy

(2160)

1919

1102

291

35.5

4.1

4.6

comp30393

39

431

(53)

PREM1A_ZM_LTR

LTR/Copia

(1836)

1572

1182

8117

4.7

2.6

0.6

comp75688

1974

3009

(241)

Gypsy67-ZM_LTR

LTR/Gypsy

2581

3638

(423)

  1. Score: Smith-Waterman score of the match
  2. % div.: % substitutions in matching region compared to the consensus
  3. % del.: % of bases opposite a gap in the query sequence (deleted bp)
  4. % ins.: % of bases opposite a gap in the repeat consensus (inserted bp)