TY - BOOK AU - Jones, R. N. AU - Rees, H. PY - 1982 DA - 1982// TI - B chromosomes PB - Academic CY - New York ID - Jones1982 ER - TY - JOUR AU - Jones, R. N. AU - Viegas, W. AU - Houben, A. PY - 2008 DA - 2008// TI - A century of B chromosomes in plants: so what? JO - Ann Bot VL - 101 UR - https://doi.org/10.1093/aob/mcm167 DO - 10.1093/aob/mcm167 ID - Jones2008 ER - TY - STD TI - Beckett JB. Cytogenetic, genetic and plant breeding applications of B-A translocations in maize. In: Chromosome Engineering in Plants: Chromosome engineering in plants: genetics, breeding, evolution. Part A. Edited by Gupta PK, Tsuchiya T, Edition 1 edn. Amsterdam: Elsevier Science; 1991. 493–529 ID - ref3 ER - TY - JOUR AU - Jin, W. AU - Lamb, J. C. AU - Vega, J. M. AU - Dawe, R. K. AU - Birchler, J. A. AU - Jiang, J. PY - 2005 DA - 2005// TI - Molecular and functional dissection of the maize B chromosome centromere JO - Plant Cell VL - 17 UR - https://doi.org/10.1105/tpc.104.030643 DO - 10.1105/tpc.104.030643 ID - Jin2005 ER - TY - JOUR AU - Ward, E. J. PY - 1973 DA - 1973// TI - The heterochromatic B chromosome of maize: The segments affecting recombination JO - Chromosoma VL - 43 UR - https://doi.org/10.1007/BF00483377 DO - 10.1007/BF00483377 ID - Ward1973 ER - TY - JOUR AU - Ward, E. J. PY - 1973 DA - 1973// TI - Nondisjunction: localization of the controlling site in the maize B chromosome JO - Genetics VL - 73 ID - Ward1973 ER - TY - JOUR AU - Roman, H. PY - 1947 DA - 1947// TI - Mitotic Nondisjunction in the Case of Interchanges Involving the B-Type Chromosome in Maize JO - Genetics VL - 32 ID - Roman1947 ER - TY - JOUR AU - Carlson, W. R. PY - 1978 DA - 1978// TI - The B, chromosome of corn JO - Annu Rev Genet VL - 12 UR - https://doi.org/10.1146/annurev.ge.12.120178.000253 DO - 10.1146/annurev.ge.12.120178.000253 ID - Carlson1978 ER - TY - JOUR AU - Lin, B. Y. PY - 1978 DA - 1978// TI - Regional control of nondisjunction of the B chromosome in maize JO - Genetics VL - 90 ID - Lin1978 ER - TY - JOUR AU - Han, F. AU - Lamb, J. C. AU - Yu, W. AU - Gao, Z. AU - Birchler, J. A. PY - 2007 DA - 2007// TI - Centromere function and nondisjunction are independent components of the maize B chromosome accumulation mechanism JO - Plant Cell VL - 19 UR - https://doi.org/10.1105/tpc.106.049577 DO - 10.1105/tpc.106.049577 ID - Han2007 ER - TY - JOUR AU - Carlson, W. R. PY - 2006 DA - 2006// TI - Unstable inheritance of maize B-type chromosomes that lack centric heterochromatin JO - Genome VL - 49 UR - https://doi.org/10.1139/G05-127 DO - 10.1139/G05-127 ID - Carlson2006 ER - TY - JOUR AU - Camacho, J. P. AU - Sharbel, T. F. AU - Beukeboom, L. W. PY - 2000 DA - 2000// TI - B-chromosome evolution JO - Philos Trans R Soc Lond B Biol Sci VL - 355 UR - https://doi.org/10.1098/rstb.2000.0556 DO - 10.1098/rstb.2000.0556 ID - Camacho2000 ER - TY - JOUR AU - Becker, S. E. D. AU - Thomas, R. AU - Trifonov, V. A. AU - Wayne, R. K. AU - Graphodatsky, A. S. AU - Breen, M. PY - 2011 DA - 2011// TI - Anchoring the dog to its relatives reveals new evolutionary breakpoints across 11 species of the Canidae and provides new clues for the role of B chromosomes JO - Chromosome Res VL - 19 UR - https://doi.org/10.1007/s10577-011-9233-4 DO - 10.1007/s10577-011-9233-4 ID - Becker2011 ER - TY - JOUR AU - Silva, D. M. AU - Pansonato-Alves, J. C. AU - Utsunomia, R. AU - Araya-Jaime, C. AU - Ruiz-Ruano, F. J. AU - Daniel, S. N. AU - Hashimoto, D. T. AU - Oliveira, C. AU - Camacho, J. P. AU - Porto-Foresti, F. PY - 2014 DA - 2014// TI - Delimiting the origin of a B chromosome by FISH mapping, chromosome painting and DNA sequence analysis in Astyanax paranae (Teleostei, Characiformes) JO - Plos One VL - 9 UR - https://doi.org/10.1371/journal.pone.0094896 DO - 10.1371/journal.pone.0094896 ID - Silva2014 ER - TY - JOUR AU - Valente, G. T. AU - Conte, M. A. AU - Fantinatti, B. E. AU - Cabral-de-Mello, D. C. AU - Carvalho, R. F. AU - Vicari, M. R. AU - Kocher, T. D. AU - Martins, C. PY - 2014 DA - 2014// TI - Origin and evolution of B chromosomes in the cichlid fish Astatotilapia latifasciata based on integrated genomic analyses JO - Mol Biol Evol VL - 31 UR - https://doi.org/10.1093/molbev/msu148 DO - 10.1093/molbev/msu148 ID - Valente2014 ER - TY - JOUR AU - Martis, M. M. AU - Klemme, S. AU - Banaei-Moghaddam, A. M. AU - Blattner, F. R. AU - Macas, J. AU - Schmutzer, T. AU - Scholz, U. AU - Gundlach, H. AU - Wicker, T. AU - Simkova, H. PY - 2012 DA - 2012// TI - Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences JO - Proc Natl Acad Sci U S A VL - 109 UR - https://doi.org/10.1073/pnas.1204237109 DO - 10.1073/pnas.1204237109 ID - Martis2012 ER - TY - JOUR AU - Alfenito, M. R. AU - Birchler, J. A. PY - 1993 DA - 1993// TI - Molecular characterization of a maize B chromosome centric sequence JO - Genetics VL - 135 ID - Alfenito1993 ER - TY - JOUR AU - Page, B. T. AU - Wanous, M. K. AU - Birchler, J. A. PY - 2001 DA - 2001// TI - Characterization of a maize chromosome 4 centromeric sequence: evidence for an evolutionary relationship with the B chromosome centromere JO - Genetics VL - 159 ID - Page2001 ER - TY - JOUR AU - Cheng, Y. M. AU - Lin, B. Y. PY - 2004 DA - 2004// TI - Molecular organization of large fragments in the maize B chromosome: indication of a novel repeat JO - Genetics VL - 166 UR - https://doi.org/10.1534/genetics.166.4.1947 DO - 10.1534/genetics.166.4.1947 ID - Cheng2004 ER - TY - JOUR AU - Kao, K. W. AU - Lin, C. Y. AU - Peng, S. F. AU - Cheng, Y. M. PY - 2015 DA - 2015// TI - Characterization of four B-chromosome-specific RAPDs and the development of SCAR markers on the maize B-chromosome JO - Mol Genet Genomics VL - 290 UR - https://doi.org/10.1007/s00438-014-0926-1 DO - 10.1007/s00438-014-0926-1 ID - Kao2015 ER - TY - JOUR AU - Jin, W. AU - Lamb, J. C. AU - Zhang, W. AU - Kolano, B. AU - Birchler, J. A. AU - Jiang, J. PY - 2008 DA - 2008// TI - Histone modifications associated with both A and B chromosomes of maize JO - Chromosome Res VL - 16 UR - https://doi.org/10.1007/s10577-008-1269-8 DO - 10.1007/s10577-008-1269-8 ID - Jin2008 ER - TY - CHAP AU - Rhoades, M. ED - Peacock, W. ED - Brock, P. PY - 1968 DA - 1968// TI - Studies on the cytological basis of crossing over BT - Replication and Recombination of Genetic Material PB - Australian Acad Sci CY - Canberra ID - Rhoades1968 ER - TY - JOUR AU - Staub, R. W. PY - 1987 DA - 1987// TI - Leaf striping correlated with the presence of B-chromosomes in maize JO - J Hered VL - 78 ID - Staub1987 ER - TY - JOUR AU - Randolph, L. F. PY - 1941 DA - 1941// TI - Genetic Characteristics of the B Chromosomes in Maize JO - Genetics VL - 26 ID - Randolph1941 ER - TY - JOUR AU - Ruiz-Estevez, M. AU - Lopez-Leon, M. D. AU - Cabrero, J. AU - Camacho, J. P. PY - 2013 DA - 2013// TI - Ribosomal DNA is active in different B chromosome variants of the grasshopper Eyprepocnemis plorans JO - Genetica VL - 141 UR - https://doi.org/10.1007/s10709-013-9733-6 DO - 10.1007/s10709-013-9733-6 ID - Ruiz-Estevez2013 ER - TY - JOUR AU - Ruiz-Estevez, M. AU - Badisco, L. AU - Broeck, J. V. AU - Perfectti, F. AU - Lopez-Leon, M. D. AU - Cabrero, J. AU - Camacho, J. P. PY - 2014 DA - 2014// TI - B chromosomes showing active ribosomal RNA genes contribute insignificant amounts of rRNA in the grasshopper Eyprepocnemis plorans JO - Mol Genet Genomics VL - 289 UR - https://doi.org/10.1007/s00438-014-0880-y DO - 10.1007/s00438-014-0880-y ID - Ruiz-Estevez2014 ER - TY - JOUR AU - Leach, C. R. AU - Houben, A. AU - Field, B. AU - Pistrick, K. AU - Demidov, D. AU - Timmis, J. N. PY - 2005 DA - 2005// TI - Molecular evidence for transcription of genes on a B chromosome in Crepis capillaris JO - Genetics VL - 171 UR - https://doi.org/10.1534/genetics.105.043273 DO - 10.1534/genetics.105.043273 ID - Leach2005 ER - TY - JOUR AU - Miao, V. P. AU - Covert, S. F. AU - VanEtten, H. D. PY - 1991 DA - 1991// TI - A fungal gene for antibiotic resistance on a dispensable ("B") chromosome JO - Science VL - 254 UR - https://doi.org/10.1126/science.1763326 DO - 10.1126/science.1763326 ID - Miao1991 ER - TY - JOUR AU - Trifonov, V. A. AU - Dementyeva, P. V. AU - Larkin, D. M. AU - O'Brien, P. C. AU - Perelman, P. L. AU - Yang, F. AU - Ferguson-Smith, M. A. AU - Graphodatsky, A. S. PY - 2013 DA - 2013// TI - Transcription of a protein-coding gene on B chromosomes of the Siberian roe deer (Capreolus pygargus) JO - BMC Biol VL - 11 UR - https://doi.org/10.1186/1741-7007-11-90 DO - 10.1186/1741-7007-11-90 ID - Trifonov2013 ER - TY - JOUR AU - Banaei-Moghaddam, A. M. AU - Meier, K. AU - Karimi-Ashtiyani, R. AU - Houben, A. PY - 2013 DA - 2013// TI - Formation and expression of pseudogenes on the B chromosome of rye JO - Plant Cell VL - 25 UR - https://doi.org/10.1105/tpc.113.111856 DO - 10.1105/tpc.113.111856 ID - Banaei-Moghaddam2013 ER - TY - JOUR AU - Lamb, J. C. AU - Riddle, N. C. AU - Cheng, Y. M. AU - Theuri, J. AU - Birchler, J. A. PY - 2007 DA - 2007// TI - Localization and transcription of a retrotransposon-derived element on the maize B chromosome JO - Chromosome Res VL - 15 ID - Lamb2007 ER - TY - JOUR AU - Lin, H. Z. AU - Lin, W. D. AU - Lin, C. Y. AU - Peng, S. F. AU - Cheng, Y. M. PY - 2014 DA - 2014// TI - Characterization of maize B-chromosome-related transcripts isolated via cDNA-AFLP JO - Chromosoma VL - 123 UR - https://doi.org/10.1007/s00412-014-0476-7 DO - 10.1007/s00412-014-0476-7 ID - Lin2014 ER - TY - JOUR AU - Du, Z. AU - Zhou, X. AU - Ling, Y. AU - Zhang, Z. AU - Su, Z. PY - 2010 DA - 2010// TI - agriGO: a GO analysis toolkit for the agricultural community JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq310 DO - 10.1093/nar/gkq310 ID - Du2010 ER - TY - JOUR AU - Kynast, R. G. AU - Okagaki, R. J. AU - Galatowitsch, M. W. AU - Granath, S. R. AU - Jacobs, M. S. AU - Stec, A. O. AU - Rines, H. W. AU - Phillips, R. L. PY - 2004 DA - 2004// TI - Dissecting the maize genome by using chromosome addition and radiation hybrid lines JO - Proc Natl Acad Sci USA VL - 101 UR - https://doi.org/10.1073/pnas.0403421101 DO - 10.1073/pnas.0403421101 ID - Kynast2004 ER - TY - JOUR AU - Grabherr, M. G. AU - Haas, B. J. AU - Yassour, M. AU - Levin, J. Z. AU - Thompson, D. A. AU - Amit, I. AU - Adiconis, X. AU - Fan, L. AU - Raychowdhury, R. AU - Zeng, Q. PY - 2011 DA - 2011// TI - Full-length transcriptome assembly from RNA-Seq data without a reference genome JO - Nat Biotechnol VL - 29 UR - https://doi.org/10.1038/nbt.1883 DO - 10.1038/nbt.1883 ID - Grabherr2011 ER - TY - JOUR AU - Lo, K. L. AU - Peng, S. F. AU - Chen, L. J. AU - Lin, B. Y. PY - 2009 DA - 2009// TI - Tandem organization of StarkB element (22.8 kb) in the maize B chromosome JO - Mol Genet Genomics VL - 282 UR - https://doi.org/10.1007/s00438-009-0452-8 DO - 10.1007/s00438-009-0452-8 ID - Lo2009 ER - TY - JOUR AU - Stark, E. A. AU - Connerton, I. AU - Bennett, S. T. AU - Barnes, S. R. AU - Parker, J. S. AU - Forster, J. W. PY - 1996 DA - 1996// TI - Molecular analysis of the structure of the maize B-chromosome JO - Chromosome Res VL - 4 UR - https://doi.org/10.1007/BF02254939 DO - 10.1007/BF02254939 ID - Stark1996 ER - TY - JOUR AU - Carchilan, M. AU - Kumke, K. AU - Mikolajewski, S. AU - Houben, A. PY - 2009 DA - 2009// TI - Rye B chromosomes are weakly transcribed and might alter the transcriptional activity of A chromosome sequences JO - Chromosoma VL - 118 UR - https://doi.org/10.1007/s00412-009-0222-8 DO - 10.1007/s00412-009-0222-8 ID - Carchilan2009 ER - TY - JOUR AU - Birchler, J. A. PY - 2010 DA - 2010// TI - Reflections on studies of gene expression in aneuploids JO - Biochem J VL - 426 UR - https://doi.org/10.1042/BJ20091617 DO - 10.1042/BJ20091617 ID - Birchler2010 ER - TY - JOUR AU - Cheng, Y. M. AU - Lin, B. Y. PY - 2003 DA - 2003// TI - Cloning and characterization of maize B chromosome sequences derived from microdissection JO - Genetics VL - 164 ID - Cheng2003 ER - TY - JOUR AU - Peng, S. F. AU - Cheng, Y. M. PY - 2011 DA - 2011// TI - Characterization of satellite CentC repeats from heterochromatic regions on the long arm of maize B-chromosome JO - Chromosome Res VL - 19 UR - https://doi.org/10.1007/s10577-010-9183-2 DO - 10.1007/s10577-010-9183-2 ID - Peng2011 ER - TY - JOUR AU - Kalyana-Sundaram, S. AU - Kumar-Sinha, C. AU - Shankar, S. AU - Robinson, D. R. AU - Wu, Y. M. AU - Cao, X. AU - Asangani, I. A. AU - Kothari, V. AU - Prensner, J. R. AU - Lonigro, R. J. PY - 2012 DA - 2012// TI - Expressed pseudogenes in the transcriptional landscape of human cancers JO - Cell VL - 149 UR - https://doi.org/10.1016/j.cell.2012.04.041 DO - 10.1016/j.cell.2012.04.041 ID - Kalyana-Sundaram2012 ER - TY - JOUR AU - Banaei-Moghaddam, A. M. AU - Martis, M. M. AU - Macas, J. AU - Gundlach, H. AU - Himmelbach, A. AU - Altschmied, L. AU - Mayer, K. F. AU - Houben, A. PY - 2015 DA - 2015// TI - Genes on B chromosomes: old questions revisited with new tools JO - Biochim Biophys Acta VL - 1849 UR - https://doi.org/10.1016/j.bbagrm.2014.11.007 DO - 10.1016/j.bbagrm.2014.11.007 ID - Banaei-Moghaddam2015 ER - TY - JOUR AU - Cai, Z. AU - Liu, H. AU - He, Q. AU - Pu, M. AU - Chen, J. AU - Lai, J. AU - Li, X. AU - Jin, W. PY - 2014 DA - 2014// TI - Differential genome evolution and speciation of Coix lacryma-jobi L. and Coix aquatica Roxb. hybrid guangxi revealed by repetitive sequence analysis and fine karyotyping JO - BMC Genomics VL - 15 UR - https://doi.org/10.1186/1471-2164-15-1025 DO - 10.1186/1471-2164-15-1025 ID - Cai2014 ER - TY - JOUR AU - Zhao, X. AU - Xu, X. AU - Xie, H. AU - Chen, S. AU - Jin, W. PY - 2013 DA - 2013// TI - Fertilization and uniparental chromosome elimination during crosses with maize haploid inducers JO - Plant Physiol VL - 163 UR - https://doi.org/10.1104/pp.113.223982 DO - 10.1104/pp.113.223982 ID - Zhao2013 ER - TY - JOUR AU - Trapnell, C. AU - Roberts, A. AU - Goff, L. AU - Pertea, G. AU - Kim, D. AU - Kelley, D. R. AU - Pimentel, H. AU - Salzberg, S. L. AU - Rinn, J. L. AU - Pachter, L. PY - 2012 DA - 2012// TI - Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks JO - Nat Protoc VL - 7 UR - https://doi.org/10.1038/nprot.2012.016 DO - 10.1038/nprot.2012.016 ID - Trapnell2012 ER - TY - JOUR AU - Nikolayeva, O. AU - Robinson, M. D. PY - 2014 DA - 2014// TI - edgeR for differential RNA-seq and ChIP-seq analysis: an application to stem cell biology JO - Methods Mol Biol VL - 1150 UR - https://doi.org/10.1007/978-1-4939-0512-6_3 DO - 10.1007/978-1-4939-0512-6_3 ID - Nikolayeva2014 ER - TY - JOUR AU - Anders, S. AU - Pyl, P. T. AU - Huber, W. PY - 2015 DA - 2015// TI - HTSeq--a Python framework to work with high-throughput sequencing data JO - Bioinformatics VL - 31 UR - https://doi.org/10.1093/bioinformatics/btu638 DO - 10.1093/bioinformatics/btu638 ID - Anders2015 ER - TY - JOUR AU - Haas, B. J. AU - Papanicolaou, A. AU - Yassour, M. AU - Grabherr, M. AU - Blood, P. D. AU - Bowden, J. AU - Couger, M. B. AU - Eccles, D. AU - Li, B. AU - Lieber, M. PY - 2013 DA - 2013// TI - De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis JO - Nat Protoc VL - 8 UR - https://doi.org/10.1038/nprot.2013.084 DO - 10.1038/nprot.2013.084 ID - Haas2013 ER - TY - JOUR AU - Livak, K. J. AU - Schmittgen, T. D. PY - 2001 DA - 2001// TI - Analysis of relative gene expression data using real-time quantitative PCR and the 2(−Delta Delta C(T)) Method JO - Methods VL - 25 UR - https://doi.org/10.1006/meth.2001.1262 DO - 10.1006/meth.2001.1262 ID - Livak2001 ER -