Genome-wide analysis and expression profiling of glyoxalase gene families in soybean (Glycine max) indicate their development and abiotic stress specific response

Ghosh, Ajit; Islam, Tahmina

doi:10.1186/s12870-016-0773-9

Table 1 List of identified GLYI genes in Soybean (Glycine max) along with their detailed information and localization

From: Genome-wide analysis and expression profiling of glyoxalase gene families in soybean (Glycine max) indicate their development and abiotic stress specific response

Name	Gene	Protein	Chro. no	CDS coordinate (5’ to 3’)	CDS (bp)	Exons	PP length (aa)	MW (kDa)	pI	Localization
GmGLYI-1	Glyma.01 g146300	Glyma.01 g146300.1	1	48150827–48154366	1044	9	347	39.3	7.01	Ch^a,c; Mt^b; Cy^b
		Glyma.01 g146300.2			1038	9	345	39.1	7.01	Ch^a,c; Mt^b; Cy^b
		Glyma.01 g146300.3			930	8	309	35.1	8.44	Ch^a,b,c; Mt^b; Cy^b
GmGLYI-2	Glyma.01 g168400	Glyma.01 g168400.1	1	50605679–50608020	579	3	192	22.0	5.04	Cy^a; Ec^b
GmGLYI-3	Glyma.04 g083100	Glyma.04 g083100.1	4	7006088–7009361	1041	9	346	38.5	5.83	Ch^a,b,c
GmGLYI-4	Glyma.05 g228500	Glyma.05 g228500.1	5	40646576–40651812	1101	9	366	40.6	8.17	Ch^a,b,c
GmGLYI-4	Glyma.05 g228500	Glyma.05 g228500.2	5	40646576–40651812	1089	9	362	40.2	6.28	Ch^a,b,c
GmGLYI-5	Glyma.06 g084500	Glyma.06 g084500.1	6	6498718–6501298	792	8	263	29.7	5.45	Cy^b
GmGLYI-6	Glyma.07 g031700	Glyma.07 g031700.1	7	2508024–2510223	519	2	172	19.6	5.10	Nu^a; Cy^b
		Glyma.07 g031700.2			369	3	122	13.9	4.89	Cy^a,b
		Glyma.07 g031700.3			381	2	126	14.5	5.03	Cy^a,b
GmGLYI-7	Glyma.07 g261400	Glyma.07 g261400.1	7	43645750–43649851	843	7	280	31.6	5.62	Cy^a,b
		Glyma.07 g261400.2			732	8	243	27.2	5.34	Cy^a,b
		Glyma.07 g261400.3			795	7	264	29.8	5.24	Cy^a,b
		Glyma.07 g261400.4			843	8	280	31.6	5.62	Cy^a,b
		Glyma.07 g261400.5			843	8	280	31.6	5.62	Cy^a,b
		Glyma.07 g261400.6			819	8	272	30.7	6.11	Cy^a,b
GmGLYI-8	Glyma.08 g035400	Glyma.08 g035400.1	8	2811954–2818455	1071	9	356	39.6	6.56	Ch^a,b,c
GmGLYI-9	Glyma.08 g211100	Glyma.08 g211100.1	8	17046316–17048640	426	3	141	16.4	4.86	Ch^a;Nu^a; Cy^a,b
GmGLYI-10	Glyma.09 g004300	Glyma.09 g004300.1	9	340275–344376	975	8	324	36.9	6.62	Mt^a; Cy^b
		Glyma.09 g004300.2			891	9	296	33.5	6.13	Cy^a,b
		Glyma.09 g004300.3			864	9	287	32.4	5.74	Cy^a,b
		Glyma.09 g004300.4			840	8	279	31.5	6.97	Cy^a,b
		Glyma.09 g004300.5			951	9	316	35.9	8.45	Mt^a,b; Cy^b
GmGLYI-11	Glyma.09 g193800	Glyma.09 g193800.1	9	41830881–41834537	1041	9	346	39.0	6.68	Ch^a,b,c; Mt^b
GmGLYI-11	Glyma.09 g193800	Glyma.09 g193800.2	9	41830881–41834537	819	7	272	30.6	8.76	Ch^a,c; Mt^b
GmGLYI-12	Glyma.09 g226500	Glyma.09 g226500.1	9	45136253–45137166	333	2	110	12.8	5.23	Cy^b
GmGLYI-13	Glyma.11 g075000	Glyma.11 g075000.1	11	5598647–5600229	579	3	192	22.1	4.97	Cy^a,b
GmGLYI-14	Glyma.11 g194200	Glyma.11 g194200.1	11	26776807–26779603	747	8	248	28.5	5.48	Po^a; Cy^b; Ec^b
GmGLYI-15	Glyma.11 g194300	Glyma.11 g194300.1	11	26780838–26784795	702	8	233	26.5	9.16	Ch^a,c; Mt^b
GmGLYI-16	Glyma.12 g079700	Glyma.12 g079700.1	12	6241940–6246776	708	7	235	26.8	9.28	Mt^a,b
		Glyma.12 g079700.2			558	6	185	21.0	5.41	Cy^a,b
		Glyma.12 g079700.3			525	8	174	20.0	9.69	Mt^a,b
GmGLYI-17	Glyma.12 g167400	Glyma.12 g167400.1	12	32196920–32200101	555	2	184	21.0	5.14	Cy^a,b; Ec^b
GmGLYI-18	Glyma.13 g106600	Glyma.13 g106600.1	13	22081599–22084230	630	5	209	23.4	6.49	Ch^a,c; Ec^b, Mt^b
GmGLYI-19	Glyma.13 g168200	Glyma.13 g168200.1	13	28259866–28261852	504	3	167	19.0	5.46	Ec^a; Cy^b; Nu^b
GmGLYI-20	Glyma.15 g009500	Glyma.15 g009500.1	15	737953–739806	522	3	173	19.4	5.58	Ch^a,b; Cy^b
GmGLYI-21	Glyma.15 g108400	Glyma.15 g108400.1	15	8534420–8539477	864	8	287	32.4	5.74	Cy^a,b
GmGLYI-22	Glyma.16 g003500	Glyma.16 g003500.1	16	194687–196274	549	2	182	20.6	5.22	Cy^a,b; Ch^b
GmGLYI-23	Glyma.17 g052700	Glyma.17 g052700.1	17	4011185–4013445	621	5	206	22.9	7.08	Ch^a,c; Mt^b
GmGLYI-24	Glyma.17 g115900	Glyma.17 g115900.1	17	9163290–9164088	438	4	145	16.5	6.88	Ch^a, Ec^a,b; Nu^b

Abbreviations: CDS coding DNA sequence, Chro chromosome, PP polypeptide length, MW molecular weight, P ^I isoelectric point, bp base pair, aa amino acid, kDa kilodalton, Ch chloroplast, Cy cytosol, Ec extracellular, Mt mitochondria, Nu nucleus, Po peroxisome
^aLocalization prediction by CELLO v.2.5 (http://cello.life.nctu.edu.tw/)
^bLocalization prediction by pSORT (http://www.genscript.com/wolf-psort.html)
^cChloroplast localization signal confirmed by ChloroP (http://www.cbs.dtu.dk/services/ChloroP/)

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ISSN: 1471-2229

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