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Table 3 Differentially expressed miRNAs between asparagus male and female plants

From: Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis

miRNA-name

Sequence

Length

Family

Expression (TPM)

Female/male

Log2 (fold change)

Female

Male

aof-miR1425-5p

UAGGAUUCAAUCCUUGCUGCU

21

miR1425

1.37

6.27

0.219

–2.1910

aof-miR156k

UGACAGAAGAGAGAGAGCAC

20

miR156

59.22

2.51

23.594

4.5603

aof-miR156a

UUGACAGAAGAGAGUGAGCAC

21

miR156

0.23

7.69

0.030

–5.0589

aof-miR159b

UUUGGAUUGAAGGGAGCUCUG

21

miR159

4.80

52.86

0.091

–3.4580

aof-miR160c

GCGUGCGAGGAGCCAAGCAUA

21

miR160

5.72

0.78

7.333

2.8744

aof-miR160b

UGCCUGGUUCCCUGUAUGCC

20

miR160

11.89

5.96

1.943

0.9583

aof-miR160d

UGCCUGGUUCCCUGUAUGCCA

21

miR160

114.55

51.14

2.240

1.1635

aof-miR160a

UGCCUGGCUCCCUGUAUGCCA

21

miR160

21.95

8.47

2.591

1.3735

aof-miR164c

GGAGAAGCAGGGCACGUGCA

20

miR164

13.72

6.75

2.033

1.0236

aof-miR164a

UGGAGAAGCAGGACACGUGC

20

miR164

5.03

2.35

2.140

1.0976

aof-miR164e

UGGAGAAGCAGGACACGUGCA

21

miR164

48.70

11.29

4.314

2.1090

aof-miR166a-2

GGAAUGUUGUCUGGCUCGUG

20

miR166

6.40

1.25

5.120

2.3561

aof-miR166b-1

GGAAUGUUGUCUGGCUCGUGG

21

miR166

83.00

35.14

2.362

1.2400

aof-miR166e-2

UCCGACCAGGCUUCAUUCCCC

21

miR166

5.72

0.63

9.079

3.1825

aof-miR166e-4

UCGCACCAGGCUUCAUUCCCC

21

miR166

5.49

1.88

2.920

1.5460

aof-miR166e-6

UCGGACCACGCUUCAUUCCCC

21

miR166

6.86

2.98

2.302

1.2029

aof-miR166e-7

UCGGACCAGACUUCAUUCCCC

21

miR166

10.75

28.55

0.377

–1.4074

aof-miR166e-8

UCGGACCAGCCUUCAUUCCCC

21

miR166

8.00

21.80

0.367

–1.4461

aof-miR166e-9

UCGGACCAGCCUUCAUUCCUC

21

miR166

0.91

5.02

0.181

–2.4659

aof-miR166e-10

UCGGACCAGGCCUCAUUCCCC

21

miR166

12.58

5.33

2.360

1.2388

aof-miR166e-11

UCGGACCAGGCUCCAUUCCCC

21

miR166

8.46

1.73

4.890

2.2898

aof-miR165a

UCGGACCAGGCUUCAUCCCCC

21

miR166

661.69

1436.29

0.461

–1.1172

aof-miR166l-2

UCGGACCAGGCUUCAUUUCUC

21

miR166

2.52

6.12

0.412

–1.2793

aof-miR166i-6

UCGGACCAGUCUUCAUUCCCC

21

miR166

1.60

13.33

0.120

–3.0589

aof-miR166k-1

CUCGGACCAGGCUUCAUCCCC

21

miR166

1.37

15.37

0.089

–3.4901

aof-miR166d-2

UCGGACCAGGCUUCAUUACCC

21

miR166

5.03

1.25

4.024

2.0086

aof-miR166d-4

UCGGCCCAGGCUUCAUUCCCC

21

miR166

17.61

1.57

11.217

3.4876

aof-miR166d-5

UCGGGCCAGGCUUCAUUCCCC

21

miR166

46.19

5.02

9.201

3.2018

aof-miR166d-6

UCGGGCCAGGCUUCAUUCCUC

21

miR166

6.63

1.10

6.027

2.5914

aof-miR166i-9

UCGGUCCAGGCUUCAUUCCCC

21

miR166

8.69

0.94

9.245

3.2087

aof-miR166b-p3

UCUCAGACCAGGCUUCAUUCC

21

miR166

6.63

2.67

2.483

1.3121

aof-miR166a-5

UCUCGGACCCGGCUUCAUUCC

21

miR166

0.46

7.37

0.062

–4.0116

aof-miR166m-1

UCGGACCAGGCUUCAUUCCUUU

22

miR166

2.29

6.27

0.365

–1.4540

aof-miR167g

UGAAGCUGCCAGCAUGAUC

19

miR167

117.74

54.25

2.170

1.1177

aof-miR167b

GGUCAUGCUCUGACAGCCUCACU

23

miR167

10.52

3.29

3.198

1.6772

aof-miR168d

CGCUUGGUGCAGGUCGGGAA

20

miR168

5.26

2.04

2.578

1.3663

aof-miR168f

CCCGCCUUGCACCAAGUGAAU

21

miR168

1.14

11.61

0.098

–3.3511

aofmiR168e

UCGCUUGGUGCAGGUCGGGU

20

miR168

13.03

1.88

6.931

2.7931

aof-miR168a-2

UCGCUUGGUGCAGAUCGGGAC

21

miR168

6.63

57.41

0.115

–3.1203

aof-miR168a-4

GAUCCCGCCUUGCACCAAGUGAAU

24

miR168

0.69

7.53

0.092

–3.4422

aof-miR171f

UGAUUGAGCCGUGCCAAUAUC

21

miR171

128.27

39.06

3.284

1.7155

aof-miR172b

GUGGCACCAUCAAGAUUCACA

21

miR172

27.67

8.00

3.459

1.7904

aof-miR390c

AGCUCAGGAGGGAUAGCGCC

20

miR390

5.94

1.57

3.783

1.9195

aof-miR390a

AAGCUCAGGAGGGAUAGCGCC

21

miR390

332.68

94.91

3.505

1.8094

aof-miR393a

UCCAAAGGGAUCGCAUUGAUC

21

miR393

5.49

2.35

2.336

1.2240

aof-miR393b

UCCAAAGGGAUCGCAUUGAUCU

22

miR393

37.95

9.10

4.170

2.0600

aof-miR396a-5p

UUCCACAGCUUUCUUGAACU

20

miR396

24.24

60.55

0.400

–1.3219

aof-miR396f

UCCACAGGCUUUCUUGAACUG

21

miR396

3.66

18.20

0.201

–2.3147

aof-miR396g

UUCCACAGCCUUCUUGAACUG

21

miR396

1.83

6.12

0.299

–1.7418

aof-miR396b-4

UUCCACAGCUUUCUUGAACUU

21

miR396

3.89

10.82

0.360

–1.4739

aof-miR408a

UGCACUGCCUCUUCCCUGGC

20

miR408

7.09

23.69

0.299

–1.7418

aof-miR408b

UGCACUGCCUCUUCCCUGGCU

21

miR408

32.24

170.99

0.189

–2.4035

cme-miR408c

UGCACUGCCUCUUCCCUGGCUU

22

miR408

13.49

59.61

0.226

–2.1456

aof-miR171h

UGAGCCGAACCAAUAUCACUC

21

miR479

185.20

46.59

3.975

1.9910

aof-miR5179

UUUUGCUCAAGACCGCGCAAC

21

miR5179

97.17

47.37

2.051

1.0363

aof-miR827c

UUAGAUGACCAUCAACAAACA

21

miR827

377.95

167.85

2.252

1.1712

aof-miRn08

AGCGGGGUGUUCUGAUCCAUA

21

 

5.03

1.88

2.676

1.4201

aof-miRn09

AGCGGGGUGUUCUGAUCCAUACAA

24

 

9.83

3.29

2.988

1.5792

aof-miRn17

CCAGACGGUCGGCGGGCUGAA

21

 

4.57

9.10

0.502

–0.9942

aof-miRn23

CGAACCCUGGUCGAUUGUUUUU

22

 

2.52

6.43

0.392

–1.3511

aof-miRn29

GUGCUUCCCCUCGUUGUCACC

21

 

0.00

10.04

0.000

 

aof-miRn30

UAAAUAGUCGGGGUUGCCAACC

22

 

3.89

9.57

0.406

–1.3004

aof-miRn33

UGGCGUGCAUGGAAUCAAGCA

21

 

13.72

5.80

2.366

1.2425

  1. TPM transcripts per million. Bold font highlights novel miRNAs in A. officinalis. All the differentially expressed miRNAs were screened out at the restrictive condition of p value < 0.05
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BMC Plant Biology

ISSN: 1471-2229

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