Table 1 Novel miRNAs abundance identified by small RNA libraries
From: microRNA-dependent gene regulatory networks in maize leaf senescence
novel miRNA | Length (nt) | sequence (5’--3’) | ELS-1 20DAP | ELS-1 30DAP | Yu87-1 20DAP | Yu87-1 30DAP |
|---|---|---|---|---|---|---|
Predict-miR-1 | 21 | CAGTGCATCCAAACAAGACCT | 1.16 | 0.00 | 0.54 | 0.00 |
Predict-miR-2 | 22 | GGAAATAATTTCTGATGACATA | 0.00 | 0.00 | 1.63 | 2.26 |
Predict-miR-3 | 21 | ATTAGGCTCGGGGACTATGGT | 0.00 | 0.88 | 22.61 | 12.19 |
Predict-miR-4 | 22 | TCTGTTTGGTTTTAGGGACTAA | 1.54 | 0.00 | 3.08 | 0.00 |
Predict-miR-5 | 21 | TCACTATCGCCGAATCTCGAA | 1.93 | 0.00 | 0.54 | 0.00 |
Predict-miR-6 | 21 | AAGTGCAGCCAAACAAGACCT | 1.16 | 0.00 | 0.54 | 0.00 |
Predict-miR-7 | 22 | ACTGGAATCCAACGGTCAGGAG | 0.00 | 3.82 | 4.52 | 6.78 |
Predict-miR-8 | 21 | TTTTAGCCCCTCCAATCTCCC | 2.31 | 1.47 | 4.34 | 3.16 |
Predict-miR-9 | 23 | TTCGAATTTCTGTCTATAATGCA | 104.53 | 0.00 | 0.00 | 31.16 |
Predict-miR-10 | 21 | CACTACAGATGAGACTAGGAG | 1.93 | 1.18 | 0.00 | 0.00 |
Predict-miR-11 | 21 | CGTCTTGTTTTTACTCCTATG | 8.10 | 15.29 | 0.00 | 3.16 |
Predict-miR-12 | 21 | GGGATTGGAGGAGCTAAAATC | 0.00 | 0.29 | 0.72 | 0.00 |
Predict-miR-13 | 22 | GAGGGACTAAAGACTAAAATAG | 0.00 | 2.94 | 0.00 | 9.03 |
Predict-miR-14 | 21 | GAGTTGATCTAGGTAATTATT | 3.09 | 1.77 | 0.00 | 0.00 |
Predict-miR-15 | 23 | TGCAGTAACGACAGTCAGAGCAG | 0.00 | 0.00 | 1.99 | 1.36 |
Predict-miR-16 | 21 | AAATACATTTTTAGGCCCTTG | 0.00 | 0.88 | 0.00 | 3.61 |
Predict-miR-17 | 21 | GTGAGAGAAGGGTATAATCAC | 0.00 | 0.88 | 0.00 | 2.71 |
Predict-miR-18 | 22 | CTTGGTAAAGTGACTCAACGTG | 1.93 | 1.77 | 0.00 | 0.00 |
Predict-miR-19 | 21 | GTATCCTTGTTCCCAAACAAG | 0.00 | 1.18 | 2.89 | 0.00 |
Predict-miR-20 | 22 | GATGGTTAACTGATGTACTCCA | 0.00 | 0.00 | 0.54 | 2.26 |
Predict-miR-21 | 21 | TAACGGGTAGAGAATCTTCTC | 13.89 | 16.18 | 0.00 | 14.00 |
Predict-miR-22 | 20 | CTTGAAGAGCAGCTAGGTCA | 24.30 | 0.00 | 0.00 | 11.74 |
Predict-miR-23 | 20 | TAGGTTAAGGCCTCGTTCGT | 5.40 | 6.77 | 1.45 | 0.00 |
Predict-miR-24 | 23 | AAATAATTTTTGATGACATACAG | 0.00 | 0.00 | 1.63 | 2.26 |
Predict-miR-25 | 20 | GCGAGAATGACGAAGAAAAT | 0.00 | 0.00 | 2.53 | 9.03 |
Predict-miR-26 | 21 | TAGTGATGCTATCAAGAATCA | 0.39 | 0.29 | 0.00 | 0.00 |
Predict-miR-27 | 21 | GTGATTATACCCTTCTCTCAC | 0.00 | 0.88 | 0.00 | 1.81 |
Predict-miR-28 | 21 | TTTTAGCCCCTCCAATCTCCT | 0.00 | 0.00 | 4.34 | 3.61 |
Predict-miR-29 | 21 | TGGTTCGTTGGATCTAGATTT | 0.00 | 0.88 | 1.27 | 0.00 |
Predict-miR-30 | 21 | ATGTAATTGAGACCCAAACAT | 0.00 | 0.88 | 0.54 | 0.00 |
Predict-miR-31 | 21 | TGGATTTTGATTGGATACATC | 0.00 | 0.00 | 5.79 | 1.81 |
Predict-miR-32 | 20 | AGCTGGAATAGCTCAGTTGG | 46.29 | 23.53 | 3.26 | 9.49 |
Predict-miR-33 | 21 | GGCATGCAAGTTCTCTAGCTA | 0.00 | 1.18 | 1.63 | 0.00 |
Predict-miR-34 | 23 | TCAGTCTGCCTTCTGTCTTTGAC | 1.16 | 2.06 | 0.00 | 0.00 |
Predict-miR-35 | 21 | CAAGGGCCTAAAAATGTATTT | 0.00 | 0.88 | 0.00 | 3.61 |
Predict-miR-36 | 20 | TGGTTCCCACTCATGACCCA | 33.94 | 63.83 | 10.31 | 21.68 |
Predict-miR-37 | 21 | AAGAGGATTGAAGGGACTAA | 0.00 | 0.00 | 1.27 | 1.81 |
Predict-miR-38 | 22 | TTCTTGTTTGGATATTTAGCTC | 0.00 | 0.88 | 1.81 | 1.81 |
Predict-miR-39 | 21 | ATGTGATTATACCCTTCTCTC | 0.00 | 0.88 | 0.00 | 1.36 |
Predict-miR-40 | 21 | TTATTCTGACATTTTGTTCTA | 0.00 | 0.00 | 2.35 | 1.81 |
Predict-miR-41 | 21 | GAGTTGATCTAGGTAACTAGT | 2.31 | 1.77 | 0.00 | 0.00 |
Predict-miR-42 | 21 | GAGCTCACCGGAACACCTCAT | 0.00 | 0.00 | 0.72 | 1.36 |
Predict-miR-43 | 20 | TTAAAGCTATATCATCACAT | 0.00 | 2.06 | 0.00 | 1.81 |
Predict-miR-44 | 21 | TGTTCGGTTGTGTGTGGATCG | 1.93 | 0.00 | 2.71 | 8.58 |
Predict-miR-45 | 21 | TTGTTAATGTTTGGAGTAGCG | 11.96 | 0.00 | 0.00 | 6.78 |
Predict-miR-46 | 23 | TGCCTCAGATGGACGCTTTGGAA | 7.33 | 7.65 | 5.43 | 7.23 |
Predict-miR-47 | 23 | TTCGAATTTTTGTCTATAATGCA | 83.70 | 0.00 | 0.00 | 27.10 |
Predict-miR-48 | 22 | TATGTATGGTCATGGTTGATGT | 3.47 | 4.41 | 0.00 | 0.00 |
Predict-miR-49 | 21 | GTTGGATTTTGTTTGGATGCA | 0.00 | 0.00 | 5.07 | 1.81 |
Predict-miR-50 | 21 | GAAACTGGTTTTTGCTGACAT | 9.64 | 3.24 | 4.88 | 7.23 |
Predict-miR-51 | 21 | TGCATCCAAACAAAATCCAAC | 0.00 | 0.00 | 5.07 | 1.81 |
Predict-miR-52 | 22 | CGGGCATGATAGACCAAGTCTA | 10.80 | 0.00 | 0.00 | 11.29 |
Predict-miR-53 | 20 | TGGGTCATGAGTGGGAACCA | 33.94 | 63.83 | 10.31 | 21.68 |
Predict-miR-54 | 21 | ATTTTAGCCTCTTCAATCCTC | 0.00 | 0.00 | 34.73 | 29.81 |
Predict-miR-55 | 23 | GCTAAAGTATATCAGGTCAAGGA | 1.93 | 4.71 | 3.26 | 4.07 |
Predict-miR-56 | 21 | CTACTTCCTTCGTTCCATAAA | 0.00 | 0.00 | 0.91 | 3.16 |
Predict-miR-57 | 21 | ATGCAGACGCAACCGAACAAG | 0.77 | 0.00 | 0.18 | 0.00 |
Predict-miR-58 | 23 | TGCTCAGCAGTCAGTAAGTCAGT | 3.86 | 3.24 | 2.17 | 4.52 |
Predict-miR-59 | 23 | TTCACTGTCAGAGATCTTCACGG | 9.26 | 5.00 | 6.15 | 0.00 |
Predict-miR-60 | 21 | GTCAATACTAGAGAATCCAAA | 0.00 | 0.00 | 2.71 | 1.36 |
Predict-miR-61 | 21 | ACTAGATTGGAGGGGCTAAAA | 1.93 | 0.00 | 0.00 | 3.16 |
Predict-miR-62 | 21 | CTGTTGGCTACCGTCGTCGAG | 3.09 | 2.35 | 0.91 | 0.00 |
Predict-miR-63 | 23 | TCCGGGCTTGTTTCGTAGAAATC | 1.54 | 1.77 | 0.00 | 0.00 |
Predict-miR-64 | 21 | AGTTAGATTTTGATTAGATGC | 1.54 | 0.00 | 0.72 | 0.00 |
Predict-miR-65 | 21 | GTCTGTAAATTGTTCTGCATA | 27.39 | 19.12 | 38.35 | 31.16 |
Predict-miR-66 | 22 | AGAGATTGTTATTTATAATGTT | 0.00 | 0.00 | 1.63 | 1.36 |
Predict-miR-67 | 21 | GCTCTCTCTGGTTCTCCCGAT | 3.86 | 3.53 | 0.00 | 0.00 |
Predict-miR-68 | 20 | AAGTTTAGGGATTTTTGGAG | 1.54 | 0.00 | 0.00 | 7.68 |
Predict-miR-69 | 21 | GGATCCAAACGCAACCGAACA | 3.86 | 0.00 | 3.44 | 9.49 |
Predict-miR-70 | 22 | AACATATGATGTTAACTAGGAG | 0.00 | 0.00 | 0.54 | 1.81 |
Predict-miR-71 | 20 | CTGGAATAGCTCAGTTGGTT | 46.29 | 23.53 | 0.00 | 9.49 |
Predict-miR-72 | 21 | GTTTGGGTCTCAATTACATCC | 0.00 | 0.88 | 0.54 | 0.00 |
Predict-miR-73 | 20 | TCGATCAGAACATCTGGCTT | 1.54 | 1.77 | 0.00 | 0.00 |
Predict-miR-74 | 21 | TAGCCTAAAACCGACGGGAAT | 0.00 | 0.00 | 3.44 | 2.71 |
Predict-miR-75 | 21 | TTTAACGGATAGAGAATCTTC | 10.42 | 11.18 | 17.19 | 12.65 |
Predict-miR-76 | 21 | GGGAGATTGGAGGGGCTAAAA | 2.31 | 0.00 | 4.34 | 3.16 |
Predict-miR-77 | 20 | AGCAGGAGGAAGGAGAGGAG | 11.57 | 0.00 | 1.09 | 0.00 |
Predict-miR-78 | 22 | AGAGATTTTTATTTATAGTGTT | 0.00 | 0.00 | 1.81 | 1.36 |
Predict-miR-79 | 21 | TGCATTCAATCAAAATCCAAC | 0.00 | 0.00 | 5.07 | 1.81 |
Predict-miR-80 | 21 | GTTAACGGATAGAGAATGTTC | 0.00 | 0.00 | 2.53 | 0.45 |
Predict-miR-81 | 22 | CTCCTGACCGTTGGATTCCAGT | 1.16 | 3.82 | 4.52 | 6.78 |
Predict-miR-82 | 21 | TTTATGGAACGAAGGAAGTAG | 0.00 | 0.00 | 0.91 | 3.16 |
Predict-miR-83 | 21 | CGATCCAAACGCAACCGAACA | 3.86 | 0.00 | 3.26 | 9.49 |
Predict-miR-84 | 22 | TAGACACAGATGGACCCTACAA | 2.31 | 1.18 | 0.00 | 0.00 |
Predict-miR-85 | 20 | TCATTTCGGCTCAGTCTTTC | 16.59 | 7.65 | 0.00 | 9.94 |
Predict-miR-86 | 22 | AGGTTAAGGACCTAGAAATGTA | 0.00 | 1.18 | 2.71 | 2.71 |
Predict-miR-87 | 21 | GAGGATTGAAGAGGCTAAAAT | 0.00 | 0.00 | 34.55 | 29.81 |
Predict-miR-88 | 21 | TTCTAGGTCTTGAACTTGTTA | 2.70 | 1.77 | 0.00 | 0.00 |
Predict-miR-89 | 21 | GCTTATTTACGTCGGTTTTAG | 0.00 | 0.00 | 1.45 | 1.36 |
Predict-miR-90 | 21 | GAGTTGATCTAGGTAATGAGT | 2.31 | 1.77 | 0.00 | 0.00 |
Predict-miR-91 | 21 | TTTTAGCCCCTCCAATCTAGT | 1.93 | 1.18 | 3.26 | 3.16 |
Predict-miR-92 | 21 | GTGATTATACCATTCTCTCAC | 0.00 | 1.18 | 0.00 | 2.26 |
Predict-miR-93 | 21 | ATGTCAGCAAAAACCAGTTTC | 9.64 | 3.24 | 4.88 | 7.23 |
Predict-miR-94 | 22 | GATTTTGAGCTTTACTGTTGGA | 0.00 | 0.00 | 1.09 | 4.97 |
Predict-miR-95 | 21 | AGGTCTTGTTTGGCTGCACTT | 1.16 | 0.00 | 0.54 | 0.00 |
Predict-miR-96 | 20 | TGTTGGTCAAAGTTTCAAAA | 0.00 | 0.00 | 1.45 | 2.71 |
Predict-miR-97 | 21 | TTTAGCCTCTACAATTCTCTC | 0.00 | 0.00 | 29.31 | 25.74 |
Predict-miR-98 | 22 | GGCTGACATGACCAAGTTCAAC | 0.00 | 0.00 | 1.27 | 1.36 |
Predict-miR-99 | 20 | TTGTGGTGATGAATTATGAA | 5.79 | 15.88 | 12.84 | 21.68 |
Predict-miR-100 | 21 | CGTTAGATTTTGATTGGATGT | 1.16 | 0.00 | 1.45 | 0.00 |
Predict-miR-101 | 21 | GTTGATCTAGATAATTAGTGA | 2.31 | 1.77 | 0.00 | 0.00 |
Predict-miR-102 | 21 | TGTTCGGTTGCGTTTGGATCC | 0.00 | 0.00 | 3.44 | 9.49 |
Predict-miR-103 | 21 | ACTCATTACCTAGATCAACTC | 2.31 | 1.77 | 0.00 | 0.00 |
Predict-miR-104 | 21 | ATCTAGATCTAACGGACTAAA | 0.00 | 2.06 | 3.26 | 0.00 |
Predict-miR-105 | 23 | TGCTCAGCAGTCAGTCAGTCAGT | 3.09 | 0.00 | 1.81 | 3.61 |
Predict-miR-106 | 21 | ATTAAATCTGGACCCTTCATC | 5.01 | 2.35 | 0.00 | 2.71 |
Predict-miR-107 | 21 | CCCGATGAATGTACATGATTT | 0.00 | 8.53 | 3.98 | 4.97 |
Predict-miR-108 | 21 | TGATCCAGACACAACCGAACA | 0.00 | 9.41 | 0.00 | 13.55 |
Predict-miR-109 | 20 | AACCAACTGAGCTATTCCAG | 0.00 | 23.53 | 0.00 | 9.49 |
Predict-miR-110 | 21 | ACTAGTTACCTAGATCAACTC | 2.31 | 1.77 | 0.00 | 0.00 |
Predict-miR-111 | 21 | ATGGATTTTAATTGGATGCAC | 2.31 | 1.77 | 0.00 | 0.00 |
Predict-miR-112 | 21 | TAGATTTTGATTGGATGCATC | 0.00 | 0.00 | 5.79 | 2.26 |
Predict-miR-113 | 21 | TGTTCGGTTGTGTCTGGATCA | 7.33 | 9.41 | 9.05 | 13.55 |
Predict-miR-114 | 21 | TTTTGTTAATGTTTGGAGTAG | 11.96 | 15.00 | 0.00 | 6.78 |
Predict-miR-115 | 21 | TGGATTGTATAATCTAGATAC | 4.24 | 2.06 | 0.00 | 0.00 |
Predict-miR-116 | 20 | GCTCTATCTTTAAGCAACTT | 0.00 | 3.53 | 0.00 | 5.42 |
Predict-miR-117 | 21 | AGGTCTTGTTTGGATGCACTG | 1.16 | 0.00 | 0.54 | 0.00 |
Predict-miR-118 | 21 | TTATGATATGTTACTCTACTA | 0.00 | 0.00 | 5.25 | 4.07 |
Predict-miR-119 | 22 | CGCCGAGTTCTGTAGCTAGAGC | 133.46 | 0.00 | 86.11 | 0.00 |
Predict-miR-120 | 21 | CCGAGGCGGGTTCTTCTCCTA | 0.00 | 0.00 | 0.72 | 2.71 |
Predict-miR-121 | 21 | GAGATTGGAGGGGCTAAAATC | 2.70 | 0.00 | 4.34 | 3.61 |
Predict-miR-122 | 23 | TTCGAATTCCTGTCTATAATGCA | 74.45 | 0.00 | 1.63 | 0.00 |
Predict-miR-123 | 21 | GAGTGGATTGTAGAGGCTAAA | 0.00 | 0.00 | 30.93 | 25.29 |
Predict-miR-124 | 21 | AGAACTACAATTTTCTAAGGG | 0.00 | 0.00 | 1.27 | 1.36 |
Predict-miR-125 | 22 | AAGGCTGACATGACCAAGTTCA | 0.00 | 0.00 | 1.27 | 1.36 |
Predict-miR-126 | 21 | TTTCTAGGTCTTGAACTTGTT | 0.00 | 0.00 | 1.27 | 1.36 |
Predict-miR-127 | 21 | CTCGACGACGGTAGCCAACAG | 3.09 | 2.35 | 0.00 | 0.00 |
Predict-miR-128 | 23 | TCCTTGACCTGATATACTTTAGC | 1.93 | 4.71 | 3.26 | 4.07 |
Predict-miR-129 | 23 | TATCCGGGCTTGTTTCGTAGAAA | 1.54 | 1.77 | 0.00 | 0.00 |
Predict-miR-130 | 21 | TATGCAGAACAATTTACAGAC | 27.39 | 19.12 | 38.35 | 31.16 |
Predict-miR-131 | 20 | GTTTAGGGATTTTTGGAGTT | 1.54 | 0.00 | 0.00 | 7.68 |
Predict-miR-132 | 20 | ATGTGATGATATAGCTTTAA | 0.00 | 2.06 | 0.00 | 1.81 |
Predict-miR-133 | 23 | ACTGACTTACTGACTGCTGAGCA | 3.86 | 3.24 | 2.17 | 4.52 |
Predict-miR-134 | 21 | TTTAGCCTCTACAATCCACTC | 0.00 | 0.00 | 30.93 | 25.29 |
Predict-miR-135 | 21 | CTTGTTCGGTTGCGCCTGGAT | 6.17 | 8.24 | 6.33 | 4.97 |
Predict-miR-136 | 21 | CTACTCCAAACATTAACAAAA | 12.34 | 0.00 | 0.00 | 7.68 |
Predict-miR-137 | 21 | TGTTCGGTTGCGTTTGGATCG | 0.00 | 0.00 | 3.26 | 9.49 |
Predict-miR-138 | 21 | GAGGATTGGAGAGGCTAAAAT | 0.00 | 0.00 | 29.49 | 25.74 |
Predict-miR-139 | 23 | TGGATCCTGGAGATAAGGCTGAA | 33.94 | 28.82 | 62.59 | 0.00 |
Predict-miR-140 | 21 | GAAAAGAACTTTCAAGAGAGA | 5.01 | 55.88 | 0.00 | 22.13 |
Predict-miR-141 | 23 | GGGCCTGATGCCACGTCTCTGTT | 1.54 | 0.00 | 0.54 | 3.16 |
Predict-miR-142 | 21 | TAGTAGAGTAACATATCATAA | 0.00 | 0.00 | 5.25 | 4.07 |
Predict-miR-143 | 21 | GTGGATTGTAGAGGCTAAAAT | 0.00 | 0.00 | 30.93 | 25.29 |
Predict-miR-144 | 22 | TTGGGGCGTAGCGTGAAAGCTG | 1.16 | 0.00 | 0.00 | 1.36 |
Predict-miR-145 | 21 | GAACATTCTCTATCCGTTAAC | 0.00 | 0.00 | 2.53 | 0.45 |
Predict-miR-146 | 20 | TTGAGAAAATTCATGAACGT | 1.93 | 0.00 | 2.35 | 0.00 |
Predict-miR-147 | 21 | GAAGATTCTCTATCCGTTAAA | 10.42 | 11.18 | 17.19 | 12.65 |
Predict-miR-148 | 21 | GAGAAGATTCTCTACCCGTTA | 13.89 | 16.18 | 0.00 | 14.00 |
Predict-miR-149 | 22 | AGGAGGTCCTGGACACATAAGT | 0.00 | 1.18 | 5.43 | 4.07 |
Predict-miR-150 | 21 | GATGAAGGGTCCAGATTTAAT | 5.01 | 0.00 | 0.00 | 2.71 |
Predict-miR-151 | 21 | TATCCCTCAGGATGCCACATC | 0.00 | 0.00 | 1.27 | 2.26 |
Predict-miR-152 | 22 | GATTTGGAGCTTTACTGTTGGA | 0.00 | 0.00 | 1.45 | 5.87 |
Predict-miR-153 | 20 | GGTGTAGTTGCTGATCCATA | 0.00 | 2.94 | 0.54 | 0.00 |
Predict-miR-154 | 21 | CTTGTTTGGGAACAAGGATAG | 0.00 | 0.00 | 1.63 | 2.71 |
Predict-miR-155 | 21 | GATTTTAGCCCCTCCAATCTC | 2.70 | 0.00 | 4.52 | 3.61 |
Predict-miR-156 | 21 | GTATCCTTGTTCCCAAACAAA | 3.09 | 0.88 | 2.35 | 0.00 |
Predict-miR-157 | 22 | TAAGAGATTGTTATTTATAGTG | 0.00 | 0.00 | 1.81 | 1.36 |
Predict-miR-158 | 21 | GTGAGAGAATGGTATAATCAC | 0.00 | 1.18 | 0.00 | 2.26 |
Predict-miR-159 | 21 | GGGATTAGAGGGGCTAAAATT | 0.00 | 0.00 | 0.72 | 0.90 |
Predict-miR-160 | 21 | ACCGTGGCTCCTGCTCCTGAT | 0.00 | 0.00 | 9.05 | 2.71 |
Predict-miR-161 | 23 | ATGCTAACACTGAACATTTTAGG | 0.00 | 2.94 | 0.00 | 4.52 |
Predict-miR-162 | 20 | GAGCCCAGCATTGTTATTTT | 0.00 | 1.47 | 0.54 | 0.00 |
Predict-miR-163 | 23 | GTGCTGTGATGAAGATGCTCAAC | 92.57 | 252.07 | 98.59 | 168.01 |
Predict-miR-164 | 21 | GAGAGAAGGGTATAATCACAT | 0.00 | 0.88 | 0.00 | 1.36 |