Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

Table 1 Number of sequenced amplicons and genotyped SNPs

Region^a	Number of sequenced amplicons	Number of final amplicons^b	Mean number of sequenced bp aligned per final amplicon	Total number of SNPs selected for genotyping	Total number of SNPs successfully genotyped
chr8:14529243..16762721	55	41	633	144	86
chr9:3040957..5046544	60	43	629	153	97
chr12:18728014..20687449	60	33	566	147	80
chr17:5195037..7207967	55	48	650	150	109
Distributed over the genome	169	129	657	174	129
Total	399	294	–	768	501

^aPosition in bp on grapevine reference sequence assembly version 12X.0 [69]. Study regions were covered by a single scaffold on chromosomes 8, 9 and 17, by two scaffolds on chromosome 12
^bNumber of amplicons containing successfully genotyped SNPs

ISSN: 1471-2229