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Table 1 Number of sequenced amplicons and genotyped SNPs

From: Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

Regiona Number of sequenced amplicons Number of final ampliconsb Mean number of sequenced bp aligned per final amplicon Total number of SNPs selected for genotyping Total number of SNPs successfully genotyped
chr8:14529243..16762721 55 41 633 144 86
chr9:3040957..5046544 60 43 629 153 97
chr12:18728014..20687449 60 33 566 147 80
chr17:5195037..7207967 55 48 650 150 109
Distributed over the genome 169 129 657 174 129
Total 399 294 768 501
  1. aPosition in bp on grapevine reference sequence assembly version 12X.0 [69]. Study regions were covered by a single scaffold on chromosomes 8, 9 and 17, by two scaffolds on chromosome 12
  2. bNumber of amplicons containing successfully genotyped SNPs