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Table 2 Putative regulatory motifs in significantly higher frequency among genes belonging to the superroot2 cluster, that are more highly expressed in individuals that inherited the P. trichocarpa QTL allele (PtQTL category), based on Fisher’s exact test

From: Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Motif Sequence p-value two side test Annotation
TGACY 0.02854664 ABA responsive element, ABRE3
TTATTT 0.02854664 highly active synthetic auxin response
RTTTTTR 0.01348537 highly active synthetic auxin response
AGATC 0.03372874 ERE (ethylene responsive element)
TTGAC 0.03372874 highly active synthetic auxin response
CCTTTT 0.01817917 highly active synthetic auxin respone
AAAGAT 0.00121528 ERE (ethylene responsive element)
TATTCT 0.01943102 highly active synthetic auxin response
CAANNNNATC 0.02472731 highly active synthetic auxin response
CAACA 0.02854664 ABA responsive element, ABRE3
GATAA 0.02854664 GARE (gibberellic acid responsive element)
RGATY 0.02854664 MeJa-responsive element (MeJaRE)
AATAAT 0.03372874 TATA Box
TATTAAT 0.00474209 TATA Box
AATAAA 0.02854664 TATA Box
ACGTG 0.04506551 ACGT motif” related to root expression
ATATT 0.02854664 RSE (root-specific element)
CANNTG 0.02854664 ACGT motif related to root expression
CAAACAC 0.00985829 RSR (root specific region) S000243
AATTAAA 0.01817917 WAR (wounding activating region)
CWWWWWWWWG 0.04047776 Wound-responsive element (WRE)
ATAGAA 0.01943102 WAR (wounding activating region)
TGHAAARK 0.0418575 Binding site of wound-inducible
ATATTTAWW 0.01082454 Wound-responsive element (WRE)
GGTTAA 0.04506551 Stress responsive element (SRE)
ATGGTA 0.03390743 Stress responsive element (SRE)
GATAAG 0.04970707 Stress responsive element (SRE)
TATTAG 0.0418575 SE2 (stem element 2)