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Table 2 Putative regulatory motifs in significantly higher frequency among genes belonging to the superroot2 cluster, that are more highly expressed in individuals that inherited the P. trichocarpa QTL allele (PtQTL category), based on Fisher’s exact test

From: Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Motif Sequence

p-value two side test

Annotation

TGACY

0.02854664

ABA responsive element, ABRE3

TTATTT

0.02854664

highly active synthetic auxin response

RTTTTTR

0.01348537

highly active synthetic auxin response

AGATC

0.03372874

ERE (ethylene responsive element)

TTGAC

0.03372874

highly active synthetic auxin response

CCTTTT

0.01817917

highly active synthetic auxin respone

AAAGAT

0.00121528

ERE (ethylene responsive element)

TATTCT

0.01943102

highly active synthetic auxin response

CAANNNNATC

0.02472731

highly active synthetic auxin response

CAACA

0.02854664

ABA responsive element, ABRE3

GATAA

0.02854664

GARE (gibberellic acid responsive element)

RGATY

0.02854664

MeJa-responsive element (MeJaRE)

AATAAT

0.03372874

TATA Box

TATTAAT

0.00474209

TATA Box

AATAAA

0.02854664

TATA Box

ACGTG

0.04506551

ACGT motif” related to root expression

ATATT

0.02854664

RSE (root-specific element)

CANNTG

0.02854664

ACGT motif related to root expression

CAAACAC

0.00985829

RSR (root specific region) S000243

AATTAAA

0.01817917

WAR (wounding activating region)

CWWWWWWWWG

0.04047776

Wound-responsive element (WRE)

ATAGAA

0.01943102

WAR (wounding activating region)

TGHAAARK

0.0418575

Binding site of wound-inducible

ATATTTAWW

0.01082454

Wound-responsive element (WRE)

GGTTAA

0.04506551

Stress responsive element (SRE)

ATGGTA

0.03390743

Stress responsive element (SRE)

GATAAG

0.04970707

Stress responsive element (SRE)

TATTAG

0.0418575

SE2 (stem element 2)