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Table 4 The detail information about the stable QTLs

From: Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

QTL name

Environment

Position

LOD

Additive

R2

Marker interval (P < 0.01)

Marker interval (P < 0.05)

LOD_L (P < 0.01)

LOD_R (P < 0.01)

LOD_L (P < 0.05)

LOD_R (P < 0.05)

qBW-chr01-1

10GY

45.41

2.43

0.25

5.32 %

CRI-SNP161-CRI-SNP168

CRI-SNP147-CRI-SNP168

45.10

47.00

44.30

47.70

 

07AY

46.41

2.20

0.20

4.81 %

  

46.00

47.70

45.40

50.30

 

08AY

47.41

2.52

0.18

5.19 %

  

45.10

48.20

42.50

50.30

 

08LQ

47.41

3.35

0.19

7.05 %

  

46.00

49.50

44.70

50.30

 

08QZ

47.41

3.44

0.28

7.83 %

  

45.60

49.20

45.40

50.30

qBW-chr02-3

08AY

21.11

2.82

0.15

6.15 %

CRI-SNP511-CRI-SNP512

CRI-SNP506-CRI-SNP519

20.70

23.00

20.70

25.10

 

08LQ

21.11

2.52

0.15

5.62 %

  

19.70

23.00

18.40

25.10

 

08QZ

21.11

2.85

0.16

6.41 %

  

20.70

22.50

19.40

24.30

 

10AY

21.11

2.57

0.15

5.67 %

  

19.30

23.80

18.40

27.30

qBW-chr03-1

08AY

34.01

4.50

0.16

9.00 %

CRI-SNP-1241-CRI-SNP-1235

CRI-SNP-1241-CRI-SNP-1231

32.60

34.80

31.40

34.80

 

08LQ

34.01

3.85

0.16

8.29 %

  

33.40

35.80

33.20

38.10

 

10AY

34.01

2.28

0.11

4.56 %

  

31.40

36.80

31.40

45.30

qBW-chr05-10

09AKS

195.81

3.52

−0.16

7.45 %

CRI-SNP-2294-CRI-SNP-2279

CRI-SNP-2294-CRI-SNP-2279

195.00

197.50

195.00

197.90

 

07AY

199.21

3.50

−0.11

7.43 %

  

199.00

200.50

197.60

200.50

 

13AY

199.21

2.85

−0.16

5.64 %

  

199.10

200.30

197.60

200.50

qBW-chr07-1

09AKS

31.51

3.97

0.17

8.89 %

CRI-SNP-5633-CRI-SNP5596

CRI-SNP-5634-CRI-SNP5581

30.40

32.10

30.40

32.20

 

08AY

32.01

2.85

0.20

6.32 %

  

31.40

32.80

30.00

33.50

 

08QZ

32.01

2.41

0.20

4.95 %

  

31.40

32.50

31.40

32.50

 

09AY

32.01

3.80

0.19

8.07 %

  

31.40

32.30

29.60

33.00

qBW-chr07-4

13AY

50.61

3.66

−0.24

7.64 %

CRI-SNP5490-CRI-SNP5481

CRI-SNP-5497-CRI-SNP5472

50.10

51.10

49.80

51.10

 

09QZ

51.11

3.34

−0.23

6.92 %

  

50.10

52.30

49.30

53.20

 

10AY

51.11

4.08

−0.23

8.45 %

  

50.30

51.50

50.10

51.60

qBW-chr07-6

10AY

58.61

4.38

−0.22

9.03 %

CRI-SNP5452-CRI-SNP-5441

CRI-SNP5454-CRI-SNP-5438

57.80

59.30

56.80

60.10

 

10ZZ

58.61

5.21

−0.28

10.89 %

  

57.80

59.20

57.80

59.70

 

09QZ

59.11

2.55

−0.19

5.35 %

  

57.80

60.20

57.80

60.70

 

13AY

60.21

2.58

−0.19

5.45 %

  

59.90

60.50

59.90

60.80

qBW-chr09-6

07AY

114.11

4.77

−0.14

10.31 %

CRI-SNP6432-CRI-SNP6455

CRI-SNP6432-CRI-SNP6455

113.70

115.40

112.80

115.40

 

09QZ

114.11

2.44

−0.13

5.01 %

  

113.00

116.70

112.80

116.70

 

09AKS

114.11

2.75

−0.16

5.80 %

  

112.70

114.60

112.00

114.60

 

09AY

114.61

3.27

−0.14

6.54 %

  

112.90

115.40

112.80

115.40

qBW-chr13-4

08LQ

58.71

2.43

−0.12

4.58 %

CRI-SNP8317-CRI-SNP-8338

CRI-SNP8313-CRI-SNP-8346

57.40

60.00

56.10

60.00

 

13AY

60.01

2.55

−0.17

5.24 %

  

58.60

63.10

58.20

66.30

 

09AY

62.81

2.33

−0.11

5.05 %

  

58.10

66.30

57.90

70.10

 

07AY

64.51

2.99

−0.12

6.06 %

  

63.70

66.80

63.70

68.30

 

08AY

64.51

2.76

−0.13

5.17 %

  

63.70

67.80

63.70

68.90

 

10AY

64.51

2.46

−0.12

4.87 %

  

62.10

66.80

58.70

68.90

qBW-chr13-7

09AKS

114.61

2.95

0.34

6.13 %

CRI-SNP8690-CRI-SNP8726

CRI-SNP8685-CRI-SNP8731

113.90

115.90

113.20

116.50

 

08LQ

114.91

8.37

0.52

16.70 %

  

114.60

115.30

114.50

115.50

 

08QZ

115.11

7.21

0.50

14.76 %

  

114.70

116.20

114.50

115.80

 

10AY

115.11

4.14

0.38

8.36 %

  

114.90

115.40

114.60

115.50

 

08AY

115.41

6.97

0.49

13.72 %

  

114.90

115.90

114.90

115.70

 

09QZ

115.41

2.99

0.34

6.45 %

  

114.60

116.30

114.30

117.30

 

07AY

115.61

4.03

0.33

8.21 %

  

115.40

117.10

115.40

116.50

qBW-chr16-4

09AY

80.21

2.97

−0.14

6.46 %

CRI-SNP12560-CRI-SNP12271

CRI-SNP12560-CRI-SNP12270

79.40

81.00

79.40

81.20

 

10AY

80.21

4.12

−0.22

8.48 %

  

79.80

84.30

79.40

83.30

 

07AY

83.01

3.25

−0.13

6.85 %

  

82.00

86.00

82.00

87.00

qBW-chr22-3

09AY

52.61

2.10

−0.10

4.52 %

CRI-SNP10333-CRI-SNP10341

CRI-SNP10330-CRI-SNP10341

51.00

54.20

49.20

56.80

 

10GY

55.81

1.97

−0.10

4.15 %

  

51.00

59.90

55.80

55.80

 

10AY

55.81

2.25

−0.11

5.03 %

  

54.20

58.30

54.20

58.90

qBW-chr23-5

08AY

101.81

2.14

0.12

4.26 %

CRI-SNP13840-CRI-SNP13862

CRI-SNP13838-CRI-SNP13865

98.00

106.50

96.80

107.30

 

10ZZ

102.61

2.46

0.16

5.26 %

  

99.00

105.00

96.90

105.80

 

08QZ

103.61

2.40

0.13

5.17 %

  

100.90

104.70

97.00

105.80

qBW-chr25-5

08AY

22.41

4.39

0.19

9.36 %

CRI-SNP10565-CRI-SNP10569

CRI-SNP10564-CRI-SNP10569

20.40

23.50

20.40

24.40

 

10ZZ

22.41

5.17

0.25

10.76 %

  

20.40

24.20

20.40

26.30

 

08LQ

22.51

2.20

0.13

4.29 %

  

20.40

26.40

20.40

27.10

 

09AY

23.51

4.08

0.18

9.26 %

  

20.40

24.40

20.30

24.40

 

09QZ

25.41

2.52

0.17

6.11 %

  

23.80

29.20

23.50

29.20

qBW-chr25-6

10ZZ

28.11

3.06

0.20

7.08 %

CRI-SNP10569-CRI-SNP10568

CRI-SNP10569-CRI-SNP10571

27.10

32.80

27.10

32.80

 

09AY

30.81

5.68

0.21

11.85 %

  

27.70

32.50

24.40

32.90

 

09QZ

30.81

2.17

0.15

4.82 %

  

29.20

32.50

29.20

32.90

qBW-chr25-7

10GY

45.91

3.51

−0.22

7.79 %

CRI-SNP10592-CRI-SNP10614

CRI-SNP10592-CRI-SNP10615

44.90

47.60

44.40

47.00

 

10AY

45.91

3.83

−0.15

7.70 %

  

44.70

48.00

44.40

48.00

 

09AY

49.61

3.83

−0.15

7.80 %

  

48.30

53.00

48.00

53.50

 

10ZZ

52.71

3.63

−0.18

7.58 %

  

52.50

53.20

52.50

53.20

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