Skip to main content

Table 2 Summary of the sequence data from Illumina sequencing

From: Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus

Library Raw reads Clean reads Clean bases (Gb) Error (%) Q20 (%) Q30 (%) GC content (%)
R_CK1_1 57130486 54867978 5.49 0.03 97.20 91.78 44.37
R_CK1_2 54713736 52859150 5.29 0.03 97.40 92.08 45.25
R_T1_1 55671406 55671406 5.57 0.03 97.26 91.79 45.19
R_T1_2 52776632 52776632 5.28 0.03 97.32 91.95 44.87
R_CK2_1 70575134 68662776 6.87 0.03 97.59 92.59 44.90
R_CK2_2 61656004 59697968 5.97 0.03 97.59 92.61 44.86
R_T2_1 62462134 62462134 6.25 0.03 97.66 92.77 44.40
R_T2_2 53206474 53206474 5.32 0.04 96.52 90.20 44.78
R_CK3_1 61917966 59434146 5.94 0.04 96.31 89.28 45.25
R_CK3_2 66649516 63956168 6.40 0.04 96.21 88.97 45.44
R_T3_1 23224306 23224306 2.32 0.05 94.80 87.41 46.27
R_T3_2 18549458 18549458 1.85 0.05 94.71 86.89 46.11
R-Total 638533252 625368596 62.53     
S_CK1_1 58045728 56103334 5.61 0.03 97.24 91.72 45.03
S_CK1_2 63689306 61798978 6.18 0.03 97.32 91.96 44.61
S_T1_1 57998512 57998512 5.80 0.03 97.27 91.85 44.24
S_T1_2 59669162 59669162 5.97 0.03 97.29 91.89 44.35
S_CK2_1 74137916 72280900 7.23 0.03 97.62 92.66 44.80
S_CK2_2 56939790 54259514 5.43 0.04 96.22 89.11 45.46
S_T2_1 49120232 49120232 4.91 0.04 96.27 89.28 44.59
S_T2_2 47405260 47405260 4.74 0.04 96.24 89.28 44.20
S_CK3_1 54341696 51982378 5.20 0.04 96.35 89.38 46.04
S_CK3_2 62599834 59709106 5.97 0.04 96.40 89.89 45.88
S_T3_1 48638388 48638388 4.86 0.04 96.21 89.17 44.96
S_T3_2 42948026 42948026 4.29 0.03 97.23 91.38 44.78
S-Total 675533850 661913790 66.19     
  1. R_CK1, R_CK2, and R_CK3: Zhonghua 6 without inoculated A. flavus cultured for 1 day, 3 days, and 7 days, respectively
  2. R_T1, R_T2, and R_T3: Zhonghua 6 with inoculated A. flavus cultured for 1 day, 3 days, and 7 days, respectively
  3. S_CK1, S_CK2, and S_CK3: Zhonghua 12 without inoculated A. flavus cultured for 1 day, 3 days, and 7 days, respectively
  4. S_T1, S_T2, and S_T3: Zhonghua 12 with inoculated A. flavus cultured for 1 day, 3 days, and 7 days, respectively
  5. Q20: The percentage of bases with a Phred value >20
  6. Q30: The percentage of bases with a Phred value >30