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Table 5 Annotation of genes differentially expressed in MD52ne at 15 and 20 DPA fiber

From: Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

Gene ID Tair 10 ID Description Fold (MD52ne/MD90ne)
15 DPA 20 DPA
Response to hormone stimulus
Gh_A08G0989 AT4G11280 1-aminocyclopropane-1-carboxylic acid synthase 6 (ACC6) 6.87 2.40
Gh_A07G0774 AT1G05010 1-aminocyclopropane-1-carboxylate oxidase 4 (ACO4) 6.35 4.28
Gh_A05G0085 AT2G25490 EIN3-binding F box protein 1 (EBF1) 5.01 2.28
Gh_A09G1760 AT4G17500 Ethylene responsive element binding factor 1 2.45 2.60
Gh_A12G1554 AT1G13260 Related to ABI3/VP1 1 4.21 4.76
Gh_D11G0427 AT5G07580 Integrase-type DNA-binding superfamily protein 7.92 2.64
Gh_A11G2242 AT5G43700 AUX/IAA transcriptional regulator family protein 10.19 7.99
Gh_A11G0443 AT2G14960 Auxin-responsive GH3 family protein 2.90 0.26
Gh_A08G1509 AT4G16780 Homeobox protein 2 5.01 2.40
Gh_D08G2557 AT5G57050 Protein phosphatase 2C family protein 3.56 2.12
Gh_D06G0657 AT4G26080 Protein phosphatase 2C family protein 2.68 2.24
Gh_D09G0145 AT5G15230 GAST1 protein homolog 4 3.96 3.19
Gh_A06G0128 AT5G25900 GA requiring 3 0.42 0.44
Gh_D06G0417 AT1G01720 NAC transcriptional regulator 2.72 3.23
Gh_D01G0514 AT4G27410 NAC transcriptional regulator 2.58 2.09
Inter & intra-cellular singaling cascade
Gh_D08G0203 AT5G48940 Leucine rich repeat receptor-like kinase (LRR RLK) 376.83 701.62
Gh_D12G0208 AT1G49740 PLC-like phosphodiesterases superfamily protein 38.86 6.53
Gh_A11G1809 AT1G13680 PLC-like phosphodiesterases superfamily protein 5.13 4.88
Gh_D11G0427 AT5G07580 Integrase-type DNA-binding superfamily protein 7.92 2.64
Gh_A05G2005 AT5G12480 Calmodulin-domain protein kinase 7 12.98 15.75
Gh_A07G0928 AT5G59010 Protein kinase protein with tetratricopeptide repeat domain 4.75 2.48
Gh_A02G1701 AT2G17220 Protein kinase superfamily protein 3.77 2.06
Gh_A03G0393 AT5G59010 Protein kinase protein with tetratricopeptide repeat 3.11 2.71
Gh_D10G0338 AT2G33170 Leucine-rich repeat receptor-like kinase 2.18 2.33
Gh_D05G1232 AT1G11300 Protein serine/threonine kinases 0.41 2.94
Gh_D12G0893 AT1G54610 Protein kinase superfamily protein 0.39 0.18
Gh_D01G1037 AT4G20140 Leucine-rich repeat transmembrane kinase 0.34 0.30
Gh_A12G0190 AT1G49820 S-methyl-5-thioribose kinase 0.20 0.27
Gh_A03G0234 AT2G30500 Kinase interacting (KIP1-like) family protein 0.00 0.01
Gh_D12G2621 AT3G22370 Alternative oxidase 1A 0.03 0.17
Cell wall modification
Gh_D13G0786 AT1G26770 Expansin A10 3.72 2.14
Gh_A04G0707 AT2G39700 Expansin A4 3.67 4.21
Gh_A05G1180 AT3G14310 Pectin methylesterase 3 (PME3) 3.41 6.70
Gh_A03G1432 AT4G03210 Xyloglucan endotransglucosylase/hydrolase 9 (XET9) 2.56 1.03
Gh_A11G0768 AT4G28850 Xyloglucan endotransglucosylase/hydrolase 9 (XET26) 3.97 1.34
Gh_D08G1309 AT4G02280 Sucrose synthase 3 (Sus3) 4.70 1.00
Gh_A07G0665 AT5G37180 Sucrose synthase 5 (Sus5) 13.97 0.94
Gh_D12G0298 AT3G29810 COBRA-like protein 2 precursor 1.23 11.09
Gh_A06G0439 AT3G12500 Chitinase/ Chitinase-like (CHI/CTL) 1.00 16.63
Gh_D06G0479 AT3G12500 Chitinase/ Chitinase-like (CHI/CTL) 1.84 10.61
Lipid localization
Gh_A11G0232 AT2G45180 Lipid-transfer protein 27.06 100.50
Gh_D07G1618 AT5G48485 Lipid-transfer protein 3.54 2.78
Gh_A05G0073 AT2G10940 Lipid-transfer protein 4.66 4.32
Gh_D13G1979 AT4G30950 Fatty acid desaturase 6 2.42 2.44
Transcriptional regulation of cellular metabolic process
Gh_D06G1433 AT1G29160 Dof-type zinc finger DNA-binding protein 21.26 3.01
Gh_A13G1525 AT1G22490 bHLH DNA-binding protein 10.53 7.80
Gh_D08G0923 AT5G57660 CONSTANS-like 5 4.64 2.46
Gh_D03G1189 AT1G07530 SCARECROW-like 14 2.65 2.71
Gh_A09G0414 AT5G52510 SCARECROW-like 8 2.07 2.22
Gh_D06G1966 AT1G80840 WRKY DNA-binding protein 40 5.40 3.25
Gh_D12G1243 AT1G13960 WRKY DNA-binding protein 4 2.35 3.28
Gh_D09G1456 AT5G56270 WRKY DNA-binding protein 2 2.02 2.29
Gh_A12G1763 AT1G57820 Zinc finger (C3HC4-type RING finger) protein 4.32 6.50
Gh_A01G1274 AT5G50570 Squamosa promoter-binding transcription factor 4.67 3.05
Gh_A11G2041 AT1G69560 MYB protein 105 3.66 2.51
Gh_A12G1244 AT4G21440 MYB-like 102 0.21 0.46
Gh_A04G0781 AT2G38250 Homeodomain-like superfamily protein 3.67 2.29
Gh_A08G1509 AT4G16780 Homeobox protein 2 5.01 2.40
Gh_A06G0833 AT4G32880 Homeobox gene 8 2.57 2.12
Gh_D08G2178 AT1G09250 Basic helix-loop-helix (bHLH) DNA-binding protein 5.23 2.38
Gh_D12G2057 AT5G46910 Transcription factor jumonji (jmj) zinc finger (C5HC2 type) 2.18 2.11
Gh_D11G0427 AT5G07580 Integrase-type DNA-binding superfamily protein 7.92 2.64
Gh_A10G0516 AT3G13890 MYB protein 26 9.28 0.87
Gh_A09G1074 AT5G12870 MYB protein 46 7.81 1.03