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Table 2 The genes of light-harvesting complex genes of photosystem I and II, and light-inducible genes in bamboo

From: Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

Type Locus Tag Initial Annotation Refined Annotation Molecular Weight Isoelectric Point Amino Acids Reciprocal best gene
Annotation Synonym Oryza sativa a Arabidopsis b
LHC protein PH01002452G0070 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 1 subunit 2 LHCB1.2 27941.94 5.1540 264 LOC_Os01g41710 AT2G34420
PH01005133G0020 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 1 subunit 1 LHCB1.1 27801.90 5.1540 262 LOC_Os01g41710 AT2G34430
PH01000046G0840 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 1 subunit 2 LHCB1.2 26038.72 5.0049 242 LOC_Os09g17740 AT2G34420
PH01000653G0680 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 1 subunit 3 LHCB1.3 28081.26 5.4594 265 LOC_Os01g41710 AT1G29930
PH01001378G0550 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 1 LHCB1.2 28107.30 5.2905 265 LOC_Os01g41710 AT2G34420
PH01004107G0040 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 1 subunit 1 LHCB1.1 24516.04 8.5532 222 LOC_Os01g52240 AT2G34430
PH01000120G1210 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 3 LHCA3 29564.98 7.8679 271 LOC_Os02g10390 AT1G61520
PH01002466G0350 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 3 LHCA3 29512.88 7.8784 270 LOC_Os02g10390 AT1G61520
PH01000173G0670 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 5 LHCA5 28131.71 6.7543 260 LOC_Os02g52650 AT1G45474
PH01000184G0790 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 2 subunit 2 LHCB2.2 28531.46 5.6232 263 LOC_Os03g39610 AT2G05070
PH01000848G0570 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 2 subunit 2 LHCB2.2 28502.42 5.4743 263 LOC_Os03g39610 AT2G05070
PH01000625G0360 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 6 LHCB6 27233.50 8.7520 254 LOC_Os04g38410 AT1G15820
PH01004502G0160 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 6 LHCB6 23571.17 8.8298 213 LOC_Os04g38410 AT1G15820
PH01003036G0080 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 1 LHCA1 26527.45 6.2137 246 LOC_Os06g21590 AT3G54890
PH01000198G1100 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 4 LHCB4 31873.19 5.3334 293 LOC_Os07g37240 AT5G01530
PH01000198G0580 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 3 LHCB3 28704.91 5.6423 267 LOC_Os07g37550 AT5G54270
PH01003394G0090 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 3 LHCB3 28784.91 5.2473 267 LOC_Os07g37550 AT5G54270
PH01000086G1040 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 2 LHCA2 27826.79 5.6561 259 LOC_Os07g38960 AT3G61470
PH01000008G1530 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 4 LHCA4 26759.65 6.5941 244 LOC_Os08g33820 AT3G47470
PH01000177G0160 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 4 LHCA4 26941.80 6.5167 248 LOC_Os08g33820 AT3G47470
PH01005293G0040 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 4 LHCA4 27144.08 7.8137 247 LOC_Os08g33820 AT3G47470
PH01000242G0150 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 1 subunit 2 LHCB1.2 28137.19 5.1442 265 LOC_Os09g17740 AT2G34420
PH01001205G0170 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 5 LHCB5 30184.53 5.4954 283 LOC_Os11g13890 AT4G10340
PH01003298G0130 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 5 LHCB5 39648.83 6.5328 373 LOC_Os11g13890 AT4G10340
PH01000262G1270 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 1 subunit 3 LHCB1.3 12744.85 9.2059 122 N.A.c N.A.
PH01001205G0190 Chlorophyll a/b-binding protein N.A. N.A. 18690.99 11.6682 177 N.A. N.A.
PH01002467G0130 Chlorophyll a/b-binding protein chlorophyll a/b-binding protein N.A. 18553.35 8.4212 171 N.A. N.A.
PH01000848G0670 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 5 LHCA5 21104.52 9.1401 189 N.A. N.A.
PH01000234G1250 Chlorophyll a/b-binding protein chlorophyll a/b-binding protein   20461.82 9.3290 195 N.A. N.A.
PH01000947G0680 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 6 LHCB6 11791.44 5.2976 106 N.A. N.A.
PH01001974G0230 Chlorophyll a/b-binding protein Light-harvesting complex I chlorophyll a/b binding protein 1 LHCA1 11230.86 7.6956 105 N.A. N.A.
PH01238153G0010 Chlorophyll a/b-binding protein chlorophyll a/b-binding protein   13078.84 5.1662 115 LOC_Os07g37240.1 N.A.
PH01000903G0290 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 7 LHCB7 18099.21 4.7718 167 LOC_Os09g12540.1 N.A.
PH01000948G0030 Chlorophyll a/b-binding protein chlorophyll a/b-binding protein N.A. 13657.46 9.7935 119 N.A. N.A.
PH01003299G0020 Chlorophyll a/b-binding protein Light-harvesting complex II chlorophyll a/b binding protein 1 LHCB1 12117.37 4.8291 112 N.A. N.A.
LHC-like protein PH01001858G0020 Early light-induced protein, chloroplast precursor Early light-inducible protein 2 ELIP2 16699.45 11.4600 165 LOC_Os01g14410 N.A.
PH01001936G0100 Early light-induced protein, chloroplast precursor Early light-inducible protein 3 ELIP3 19715.93 11.8726 184 LOC_Os07g08160 N.A.
PH01002764G0110 Early light-induced protein, chloroplast precursor Early light-inducible protein 3 ELIP3 18684.59 7.8882 182 LOC_Os07g08160 N.A.
PH01002764G0170 Early light-induced protein, chloroplast precursor Early light-inducible protein 3 ELIP3 18616.46 6.2846 182 LOC_Os07g08160 N.A.
PH01002445G0060 Expressed protein One-helix protein 1 Ohp1 11717.95 10.5866 110 LOC_Os12g29570 N.A.
PH01000097G0840 Expressed protein Stress-enhanced protein 1 SEP1 11329.31 10.4135 111 LOC_Os10g25570 N.A.
PH01000213G0560 Expressed protein Stress-enhanced protein 1 SEP1 13876.24 11.4910 136 LOC_Os10g25570 N.A.
PH01003491G0150 Expressed protein Stress-enhanced protein 2 SEP2 19931.82 4.9638 188 LOC_Os04g54630 AT2G21970
PH01000280G1190 Expressed protein Stress-enhanced protein 3 SEP3 27405.31 5.2585 248 LOC_Os02g03330 N.A.
PsbS PH01000004G0130 Chlorophyll a/b-binding protein Non-photochemical quenching (NPQ) 4, Photosystem II subunit PsbS 27916.47 7.8877 268 LOC_Os01g64960 N.A.
PH01000293G0420 Chlorophyll a/b-binding protein Non-photochemical quenching (NPQ) 4, Photosystem II subunit PsbS 28036.82 8.9657 269 LOC_Os01g64960 AT1G44575
PH01000845G0420 Chlorophyll a/b-binding protein Non-photochemical quenching (NPQ) 4, Photosystem II subunit PsbS 39164.92 5.9226 377 LOC_Os04g59440 N.A.
  1. a The annotation of bamboo and Reciprocal best genes with O. sativa were from BambooGDB
  2. b The annotation of bamboo and Reciprocal best genes with A. thaliana were from BambooGDB
  3. c N/A represent no available