From: Genetic diversity, linkage disequilibrium, population structure and construction of a core collection of Prunus avium L. landraces and bred cultivars
Criteria
Threshold
Total SNP
Deleted SNP
Conserved SNP
GenCall 10 %
<0.2
5696
510
5186
Missing data
>5 %
662
4524
HWE
>0.0001
40
4484
MAFa
<0.05
3269
1215
LD (VIF)
2
889
326