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Table 4 Significant marker gene expression associations (p <0.001) with positions of eQTL

From: Expression profiling of genes involved in drought stress and leaf senescence in juvenile barley

  Gene (log ∆∆Ct) Markerb Chr.b Pos. in cMb F value p value -log p (LOD) R2 in %
Drought stress genes A1 SCRI_RS_134358 5H 149.9 7.45 8.86E-04 3.05 9.5
A1 SCRI_RS_165400 5H 150.1 7.45 8.86E-04 3.05 9.5
GAD3 BOPA2_12_31177 1H 38.0 7.81 6.03E-04 3.22 8.9
GAD3 BOPA1_4403-885 3H 142.1 12.09 6.67E-04 3.18 6.9
P5CS2 BOPA1_4403-885 3H 142.1 11.31 9.84E-04 3.40 7.5
Leaf senescence genes Contig7437 BOPA1_4403-885 3H 142.1 7.36 9.05E-04 3.01 7.1
GSII BOPA2_12_30065 7H 40.4 11.36 9.60E-04 3.04 9.5
hv_36467 BOPA1_6547-1363 1H 111.8 8.11 4.58E-04 3.02 7.9
hv_36467 BOPA2_12_31461 2H 131.9 13.14 4.00E-04 3.34 11.2
pHvNF-Y5a SCRI_RS_152393 6H 64.4 11.48 9.09E-04 3.04 7.8
pHvNF-Y5a SCRI_RS_194841 7H 81.5 12.91 4.49E-04 3.35 8.7
Genes out of GWASa AVP1 SCRI_RS_140294 5H 62.5 13.46 3.42E-04 3.47 9.1
ETFQO BOPA1_10126-999 3H 53.3 7.44 8.37E-04 3.08 10.1
ETFQO SCRI_RS_181376 5H 143.1 8.34 3.86E-04 3.41 11.5
TRIUR3 BOPA1_4392-450 5H 44.5 7.64 7.07E-04 3.15 9.9
TRIUR3 BOPA2_12_30717 5H 44.5 7.64 7.07E-04 3.15 9.9
TRIUR3 SCRI_RS_41519 5H 44.5 7.64 7.07E-04 3.15 9.9
TRIUR3 SCRI_RS_161614 5H 139.7 15.17 1.51E-04 3.82 9.8
  1. aGenes coding for proteins identified by BlastX of significant marker sequences out of a previous genome wide association study (GWAS) by Wehner et al. [20]
  2. bMarker positions are based on Comadran et al. [101]