WheatExp: an RNA-seq expression database for polyploid wheat

BMC Plant Biology

Table 1 RNA-seq datasets contained within WheatExp

Dataset	Wheat species	Tissues	Developmental stage/treatment	RNA-seq reads	% uniquely mapped reads	Data source	Reference
Wheat development timecourse	T. aestivum cv. Chinese Spring	Shoot, root, grain, spike and stem.	Three stages for each tissue	101bp Paired End (PE)	61.7 %	ENA: ERP004714	[5]
Photomorphogenesis	T. monococcum ssp. monococcum Acc. DV92	Whole seedlings	Etiolated and light-exposed seedlings.	50bp Single end (SE)	53.4 %	SRA: SRX283514	[6]
Photomorphogenesis	T. monococcum ssp. aegilopoides Acc. G3116	Whole seedlings	Etiolated and light-exposed seedlings.	101bp PE	68.0 %	SRA: SRX257915	[6]
Drought and heat stress	T. aestivum cv. TAM 107	Whole seedlings	Drought, heat and combined stress.	101bp PE	45.9 %	SRA: SRP045409	[7]
Grain layers	T. aestivum cv. Holdfast	Endosperm, inner pericarp, outer pericarp.	12 days after anthesis	50bp SE	31.4 %	ENA: ERP008767	[8]
Senescing leaf timecourse	T. turgidum ssp. durum L. cv. Kronos	Flag leaves	Heading date, 12 and 22 days after anthesis	50bp SE	33.9 %	GEO: GSE60635	[9]
Grain development timecourse	T. aestivum cv. Chinese Spring	Grain layers	10, 20 and 30 days after anthesis	101bp PE	56.1 %	ENA: ERP004505	[10]

SRA Short Read Archive, NCBI [14], GEO Gene Expression Omnibus, NCBI [15], ENA European Nucleotide Archive [16]

ISSN: 1471-2229