From: Genome-wide association study on stem rust resistance in Kazakh spring barley lines
Marker | Phase | Chr. | cM | P | R2 | Allele | MAF, % | Effect |
---|---|---|---|---|---|---|---|---|
SCRI_RS_216088 | HA | 1H | 122,2 | 1.0365E-5 | 0.19524 | T/C | C(0.12) | T(−0.95) |
BOPA1_4235-1617 | HA | 2H | 132,6 | 4.7965E-4 | 0.1287 | G/A | G(0.23) | G(0.60) |
SCRI_RS_96016 | HA | 4H | 59,5 | 7.6236E-4 | 0.11891 | A/C | C(0.14) | A(−0.69) |
BOPA2_12_10844 | HA | 5H | 93,9 | 8.9373E-5 | 0.15758 | A/C | A(0.23) | A(0.66) |
SCRI_RS_189878 | HA | 6H | 28,5 | 1.2523E-4 | 0.15157 | T/C | C(0.14) | T(−0.78) |
BOPA1_5448-298 | HA | 6H | 44,1 | 6.4042E-4 | 0.12209 | A/G | G(0.18) | A(−0.63) |
BOPA1_8005-914 | HA | 6H | 63,5 | 1.8827E-5 | 0.18494 | A/G | G(0.16) | A(−0.81) |
BOPA2_12_30637 | HA | 6H | 63,5 | 1.8827E-5 | 0.18494 | A/G | G(0.16) | A(−0.81) |
BOPA1_7370-818 | HA | 6H | 63,5 | 1.4199E-6* | 0.22878 | G/A | A(0.14) | G(−0.96) |
SCRI_RS_152841 | HA | 6H | 63,5 | 1.4199E-6* | 0.22878 | A/C | C(0.14) | A(−0.96) |
BOPA1_6205-683 | HA | 6H | 63,9 | 1.4318E-4 | 0.15073 | A/G | G(0.18) | A(−0.70) |
BOPA1_2026-302 | HA | U | 0 | 5.9975E-5 | 0.16635 | A/G | G(0.17) | A(−0.76) |
BOPA1_5611-811 | HA | U | 0 | 9.0519E-4 | 0.11825 | G/A | G(0.16) | G(0.65) |
BOPA2_12_30158 | HA | U | 0 | 3.0675E-4 | 0.13688 | A/G | A(0.20) | A(0.65) |
BOPA1_5554-1971 | HA | U | 0 | 1.4318E-4 | 0.15073 | A/G | G(0.18) | A(−0.70) |
BOPA2_12_21386 | SM | 3H | 131,3 | 7.9601E-4 | 0.11937 | C/A | A(0.39) | C(−1.05) |
SCRI_RS_189710 | SM | 3H | 135,6 | 9.1218E-4 | 0.11685 | A/G | G(0.32) | A(1.09) |