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Fig. 4 | BMC Plant Biology

Fig. 4

From: A bulk segregant transcriptome analysis reveals metabolic and cellular processes associated with Orange allelic variation and fruit β-carotene accumulation in melon fruit

Fig. 4

Bulk segregant transcriptome and SNPs analyses of melon fruit with different flesh color. a SNPs analysis of ‘green’ and ‘orange’ bulks of fruit identified only 64 SNPs (in genes with coverage higher than at least ten reads in each bulk and showing more than 90 % difference between bulks). All of identified SNPs surrounded CmOr gene in a range of 2,258,903 on chromosome 9. Each point in the figure represents one SNP. The X axis shows the location of each SNP on chromosome 9 and the Y axis represents the percentage of the polymorphic reads. Location of CmOr is marked with an orange asterisk; (b) The number of DEGs using two different adjusted P values (0.05 and 0.01) at the four analyzed fruit developmental stages. R is the ratio between mean RPKM (reads per kilobase, per million sequenced reads) of ‘orange’ bulk divided by mean RPKM of ‘green’ bulk; (c) and (d). Venn diagrams of up-regulated P < 0.01 and R > 2 (c) and down-regulated P < 0.01 and R < 0.5 (d) genes at the four fruit developmental stages

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