Table 1 Parametric analysis of gene set enrichment of GO terms in response to GA and CS
Number | ||||||
|---|---|---|---|---|---|---|
GO class | Description | Differentially expressed (13870) | Reference genome (28702) | Enrichment fold | p-value | FDRa |
Biological process | ||||||
GO:0006412 | translation | 323 | 396 | 2.268725143 | 4.30E-27 | 1.50E-23 |
GO:0009987 | cellular process | 2356 | 5297 | 1.237142882 | 1.30E-21 | 2.40E-18 |
GO:0044237 | cellular metabolic process | 1887 | 4133 | 1.269933684 | 1.40E-20 | 1.70E-17 |
GO:0008152 | metabolic process | 2703 | 6308 | 1.191870055 | 3.20E-18 | 2.80E-15 |
GO:0044267 | cellular protein metabolic process | 890 | 1791 | 1.382193889 | 5.60E-16 | 3.90E-13 |
GO:0009058 | biosynthetic process | 1038 | 2202 | 1.311156664 | 7.80E-14 | 4.60E-11 |
GO:0044249 | cellular biosynthetic process | 968 | 2075 | 1.297573011 | 3.80E-12 | 1.90E-09 |
GO:0044281 | small molecule metabolic process | 317 | 558 | 1.580154713 | 8.10E-11 | 3.60E-08 |
GO:0010467 | gene expression | 747 | 1589 | 1.307588981 | 4.80E-10 | 1.80E-07 |
GO:0019538 | protein metabolic process | 1022 | 2273 | 1.250621837 | 5.10E-10 | 1.80E-07 |
Molecular function | ||||||
GO:0003735 | structural constituent of ribosome | 234 | 265 | 2.456091438 | 5.60E-23 | 1.20E-19 |
GO:0005198 | structural molecule activity | 252 | 303 | 2.313302674 | 3.30E-22 | 3.60E-19 |
GO:0003824 | catalytic activity | 2579 | 6355 | 1.128782675 | 2.30E-09 | 1.70E-06 |
GO:0016874 | ligase activity | 146 | 246 | 1.650791775 | 1.60E-06 | 0.00087 |
GO:0019001 | guanyl nucleotide binding | 121 | 212 | 1.587537735 | 4.30E-05 | 0.017 |
GO:0032561 | guanyl ribonucleotide binding | 119 | 209 | 1.58370841 | 5.40E-05 | 0.017 |
GO:0005525 | GTP binding | 119 | 209 | 1.58370841 | 5.40E-05 | 0.017 |
GO:0016879 | ligase activity, forming carbon-nitrogen bonds | 100 | 171 | 1.626591271 | 9.70E-05 | 0.026 |
Cellular component | ||||||
GO:0005622 | intracellular | 1106 | 2064 | 1.490458821 | 4.00E-28 | 3.00E-25 |
GO:0005737 | cytoplasm | 496 | 727 | 1.8976749 | 8.70E-28 | 3.30E-25 |
GO:0044444 | cytoplasmic part | 411 | 570 | 2.005587037 | 1.90E-26 | 4.70E-24 |
GO:0032991 | macromolecular complex | 469 | 694 | 1.87969731 | 1.10E-25 | 2.00E-23 |
GO:0030529 | ribonucleoprotein complex | 259 | 294 | 2.450343564 | 3.50E-25 | 5.20E-23 |
GO:0044424 | intracellular part | 852 | 1555 | 1.523995726 | 1.00E-23 | 1.30E-21 |
GO:0005840 | ribosome | 234 | 265 | 2.456091438 | 5.60E-23 | 6.00E-21 |
GO:0044464 | cell part | 1729 | 3696 | 1.301180597 | 4.30E-22 | 3.60E-20 |
GO:0005623 | cell | 1729 | 3696 | 1.301180597 | 4.30E-22 | 3.60E-20 |
GO:0043229 | intracellular organelle | 657 | 1185 | 1.542132063 | 2.80E-19 | 1.90E-17 |