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Table 1 Thirty-one out of 115 resequenced cucumber accessions have the TE-allele of CsaMLO8

From: A transposable element insertion in the susceptibility gene CsaMLO8 results in hypocotyl resistance to powdery mildew in cucumber

Accession number NCBI SRA

TE-allele reads

WT-allele reads

Putative genotype

PI or CGN number

Name accession

Group

SRR543205

9

0

Homozygous

PI 215589

13598

Indian

SRR543216

17

0

Homozygous

V05A0674

Bei Jing Xiao Ci

East Asian

SRR543221

1

9

Heterozygous

V05A1333

Liao Tong Mi Ci

East Asian

SRR543223

19

0

Homozygous

V05A0920

He Cha Huang Gua

East Asian

SRR543224

19

0

Homozygous

V05A1115

Qian Qi Li Huang Gua

East Asian

SRR543225

1

7

Heterozygous

V05A0985

Ye San Bai

East Asian

SRR543226

23

0

Homozygous

V05A0428

Liao Yang Ye San

East Asian

SRR543228

1

0

Homozygous

-

228

East Asian

SRR543230

18

0

Homozygous

V05A0522

Huang Gua

East Asian

SRR543231

5

8

Heterozygous

V05A0552

Qing Dao Qiu Ye Er San

East Asian

SRR543240

1

13

Heterozygous

CGN19828

-

East Asian

SRR543242

22

0

Homozygous

V05A0034

Da Ci Huang Gua

East Asian

SRR543243

12

1

Heterozygous

V05A1427

Qiu Huang Gua

East Asian

SRR543244

1

7

Heterozygous

V05A0291

Leng Lu Huang Gua

East Asian

SRR543246

1

0

Homozygous

-

Bai Ye San

East Asian

SRR543251

4

0

Homozygous

-

2004348

East Asian

SRR543252

11

0

Homozygous

CGN20266

Hok

Eurasian

SRR543253

6

0

Homozygous

-

151G

Eurasian

SRR543257

5

0

Homozygous

CGN20512

752

Eurasian

SRR543258

9

0

Homozygous

CGN20515

Gy 3 (S4)

Eurasian

SRR543264

2

0

Homozygous

-

65G

Eurasian

SRR543265

11

0

Homozygous

-

G8

Eurasian

SRR543267

14

0

Homozygous

V05A0726

Jin Yan Er Hao

East Asian

SRR543269

10

3

Heterozygous

CGN19579

1972 B-2

Eurasian

SRR543271

15

0

Homozygous

CGN19844

2163

Eurasian

SRR543272

2

5

Heterozygous

PI 234517/CGN20898

SC 50

Eurasian

SRR543274

11

0

Homozygous

CGN21627

Spartan Garden MSU-C7-63

Eurasian

SRR543275

4

0

Homozygous

-

Marketmore76

Eurasian

SRR543276

4

0

Homozygous

-

GY14

Eurasian

SRR543281

9

3

Heterozygous

PI 482412

TGR 580

Indian

SRR543293

6

8

Heterozygous

PI 605943

USM 307

Indian

  1. Total reads of 115 recently resequenced cucumber accessions [8] were assayed in silico for the presence of reads indicating the presence of either the allele of CsaMLO8 characterised by the insertion of a TE, or the wild-type allele. The amount of reads indicating presence of either the TE-allele or the WT-allele of CsaMLO8 is given. Database number, accession names and geographic groups of accessions were obtained from [8]
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BMC Plant Biology

ISSN: 1471-2229

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