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Table 2 Four different transcript regulation patterns in drought stress response

From: Global analysis of uncapped mRNA changes under drought stress and microRNA-dependent endonucleolytic cleavages in foxtail millet

Type Gene number Change after PEG-treatment
I 671 D↑R↑
453 D↓R↓
II 260 D↑R-
63 D↓R-
III 2 D↑R↓
0 D↓R↑
IV 466 D-R↑
781 D-R↓
  1. D: uncapped mRNA abundance indicated by parallel analysis of RNA end tags; R: transcript abundance indicated by RNA-Seq reads. Genes with log2 (fold change) ≥ 1 and a P-value < 0.001 were considered as up regulated genes and genes with log2 (fold change) ≤ − 1 and a P-value < 0.001 were considered as down regulated genes. Genes with −1 < log2 (fold change) < 1 and a P-value > 0.001 were designated as unchanged