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Table 1 Function annotations of top 10 up-regulated and down-regulated genes in PARE analysis

From: Global analysis of uncapped mRNA changes under drought stress and microRNA-dependent endonucleolytic cleavages in foxtail millet

Transcript ID Log2 (Dd/Dc) Best rice hit name Best rice hit define
Up-regulated
Si037737m 9.53 Os03g19290.1 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
Si026583m 9.34 Os11g26570.1 dehydrin, putative, expressed
Si029917m 9.20 Os03g20680.1 late embryogenesis abundant protein 1, putative, expressed
Si017178m 8.96 Os02g52210.1 zinc finger, C3HC4 type domain containing protein, expressed
Si023261m 8.59 Os05g46480.1 late embryogenesis abundant protein, group 3, putative, expressed
Si016486m 8.52 Os02g15250.1 late embryogenesis abundant domain-containing protein, putative, expressed
Si021866m 8.11 Os04g57880.1 heat shock protein DnaJ, putative, expressed
Si039986m 8.09 Os10g36180.1 expressed protein
Si011162m 8.02 Os01g03320.1 BBTI2 - Bowman-Birk type bran trypsin inhibitor precursor, expressed
Si002813m 7.83 Os01g50910.1 late embryogenesis abundant protein, group 3, putative, expressed
Down-regulated
Si022090m −6.45 Os03g43440.1 CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Si014685m −5.83 Os08g06110.2 MYB family transcription factor, putative, expressed
Si022014m −5.59 Os05g31730.1 transporter, monovalent cation:proton antiporter-2 family, putative, expressed
Si013398m −5.46 Os08g06110.2 MYB family transcription factor, putative, expressed
Si030389m −5.26 Os09g11230.1 Ser/Thr protein phosphatase family protein, putative, expressed
Si010832m −4.75 Os11g02520.1 WRKY104, expressed
Si003491m −4.74 Os01g21250.1 late embryogenesis abundant protein, putative, expressed
Si000941m −4.42 Os07g35350.1 glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Si005093m −4.22   
Si014375m −4.17 Os08g01140.1 cytochrome b561, putative, expressed
  1. “Dc” and “Dd” represent degradation level in control sample (Dc) and drought-treated sample (Dd) revealed by parallel analysis of RNA end tags. Annotations were retrieved from phytozome. Note: Columns are blank if no corresponding data is available