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Table 1 Function annotations of top 10 up-regulated and down-regulated genes in PARE analysis

From: Global analysis of uncapped mRNA changes under drought stress and microRNA-dependent endonucleolytic cleavages in foxtail millet

Transcript ID

Log2 (Dd/Dc)

Best rice hit name

Best rice hit define

Up-regulated

Si037737m

9.53

Os03g19290.1

mitochondrial import inner membrane translocase subunit Tim17, putative, expressed

Si026583m

9.34

Os11g26570.1

dehydrin, putative, expressed

Si029917m

9.20

Os03g20680.1

late embryogenesis abundant protein 1, putative, expressed

Si017178m

8.96

Os02g52210.1

zinc finger, C3HC4 type domain containing protein, expressed

Si023261m

8.59

Os05g46480.1

late embryogenesis abundant protein, group 3, putative, expressed

Si016486m

8.52

Os02g15250.1

late embryogenesis abundant domain-containing protein, putative, expressed

Si021866m

8.11

Os04g57880.1

heat shock protein DnaJ, putative, expressed

Si039986m

8.09

Os10g36180.1

expressed protein

Si011162m

8.02

Os01g03320.1

BBTI2 - Bowman-Birk type bran trypsin inhibitor precursor, expressed

Si002813m

7.83

Os01g50910.1

late embryogenesis abundant protein, group 3, putative, expressed

Down-regulated

Si022090m

−6.45

Os03g43440.1

CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

Si014685m

−5.83

Os08g06110.2

MYB family transcription factor, putative, expressed

Si022014m

−5.59

Os05g31730.1

transporter, monovalent cation:proton antiporter-2 family, putative, expressed

Si013398m

−5.46

Os08g06110.2

MYB family transcription factor, putative, expressed

Si030389m

−5.26

Os09g11230.1

Ser/Thr protein phosphatase family protein, putative, expressed

Si010832m

−4.75

Os11g02520.1

WRKY104, expressed

Si003491m

−4.74

Os01g21250.1

late embryogenesis abundant protein, putative, expressed

Si000941m

−4.42

Os07g35350.1

glucan endo-1,3-beta-glucosidase precursor, putative, expressed

Si005093m

−4.22

  

Si014375m

−4.17

Os08g01140.1

cytochrome b561, putative, expressed

  1. “Dc” and “Dd” represent degradation level in control sample (Dc) and drought-treated sample (Dd) revealed by parallel analysis of RNA end tags. Annotations were retrieved from phytozome. Note: Columns are blank if no corresponding data is available