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Table 3 KEGG pathway analysis of the MeJA-responsive differential expressed unigenes

From: Transcriptional responses and flavor volatiles biosynthesis in methyl jasmonate-treated tea leaves

Pathway Enzyme Seq Enzyme ID Pathway ID Fold changes of DE unigenes
Fatty acid relative metabolism
alpha-Linolenic acid metabolism     MeJA_12h MeJA_24h MeJA_48h
  allene oxide cyclase comp48042_c0_seq1 EC: map00592 −2.5 −2.33  
  acyl-CoA oxidase comp107278_c0_seq1 EC: map00592 2.37 4.24 1.11
  LOX2S; lipoxygenase comp120346_c1_seq33 EC: map00592 6.81 5.1  
  LOX3S; lipoxygenase comp120346_c1_seq24 EC: map00592   5.1  
  jasmonate O-methyltransferase comp108303_c0_seq1 EC: map00592 3.97 7.52  
  ACAA1; acetyl-CoA acyltransferase 1 comp97676_c0_seq1 EC: map00592   −2.13  
Linoleic acid metabolism
  LOX1_5; linoleate 9S-lipoxygenase comp115097_c0_seq1 EC: map00591 −2.13   
Biosynthesis of unsaturated fatty acids
  DESA1; acyl-[acyl-carrier-protein] desaturase comp108284_c0_seq2 EC: map01040 −47.62   
  FAD2; omega-6 fatty acid desaturase (delta-12 desaturase) comp103729_c0_seq1 EC:1.14.19.- map01040 −4   
  SCD; stearoyl-CoA desaturase (delta-9 desaturase) comp108284_c0_seq2 EC: map01040 −47.62 −66.67 −76.92
  FAD8; omega-3 fatty acid desaturase (delta-15 desaturase) comp118154_c5_seq3 EC:1.14.19.- map01040 2.73 3.78 2.63
  HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase comp110054_c0_seq1 EC: map01040    18.24
  PHS1; very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase comp26306_c0_seq1 EC: map01040    31.15
Amino acid relative metabolism
Arginine and proline metabolism
  pyrroline-5-carboxylate reductase comp109262_c0_seq1 EC: map00330 −2.33 −3.23  
  creatine kinase comp115225_c0_seq1 EC: map00330 −2.13 −4.17 40.19
  aldehyde dehydrogenase (NAD+) comp101398_c0_seq1 EC: map00330   2.26  
  PRODH; proline dehydrogenase comp106217_c0_seq1 EC:1.5.-.- map00330   4.57 1.18
  spermidine synthase comp107047_c0_seq3 EC: map00330   12.78  
  arginase comp114916_c0_seq1 EC: map00330   3.41 3.14
  speD; S-adenosylmethionine decarboxylase comp107569_c0_seq9 EC: map00330   4.28  
  glnA; glutamine synthetase comp100912_c0_seq1 EC: map00330   3.12 1.05
  ALDH18A1; delta-1-pyrroline-5-carboxylate synthetase comp107259_c0_seq7 EC: map00330   2.98  
  argAB; amino-acid N-acetyltransferase comp121994_c0_seq4 EC: map00330   2.18  
  ornithine decarboxylase comp114034_c0_seq1 EC: map00330   −3.13 −1.12
  GLUD1_2; glutamate dehydrogenase (NAD(P)+) comp117818_c0_seq2 EC: map00330    45.52
  CNDP2; cytosolic nonspecific dipeptidase comp91028_c0_seq1 EC: map00330    14.85
Valine, leucine and isoleucine biosynthesis
  ilvC; ketol-acid reductoisomerase comp97612_c1_seq1 EC: map00290 −20.41 −19.23  
  branched-chain amino acid aminotransferase comp119162_c0_seq8 EC: map00290 71.4 65.24  
  leuA; 2-isopropylmalate synthase comp121716_c0_seq8 EC: map00290   2.14  
Valine, leucine and isoleucine degradation
  aldehyde dehydrogenase (NAD+) comp101398_c0_seq1 EC: map00280 2.44 2.26  
  HIBCH; 3-hydroxyisobutyryl-CoA hydrolase comp117162_c1_seq5 EC: map00280   2.44 2.17
  ACADM; acyl-CoA dehydrogenase comp120137_c0_seq1 EC: map00280    22.02
  DLD; dihydrolipoamide dehydrogenase comp104094_c0_seq1 EC: map00280    31.87
  ACAA2; acetyl-CoA acyltransferase 2 comp80532_c0_seq1 EC: map00280    18.16
  HADHB; acetyl-CoA acyltransferase comp88765_c0_seq1 EC: map00280    9.36
  ECHS1; enoyl-CoA hydratase comp110838_c0_seq1 EC: map00280    29.37
  HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase comp110054_c0_seq1 EC: map00280    18.24
  ACADSB; short/branched chain acyl-CoA dehydrogenase comp102774_c0_seq1 EC: map00280    67.47
Phenylalanine metabolism
  TAT; tyrosine aminotransferase comp119529_c0_seq30 EC: map00400 −3.85   
  peroxidase comp119870_c0_seq14 EC: map00400 −2   1.03
  trpB; tryptophan synthase beta chain comp123596_c0_seq1 EC: map00400 7.84   
  aroB; 3-dehydroquinate synthase comp113795_c0_seq1 EC: map00400 2.01   
  chorismate mutase comp112016_c0_seq2 EC: map00400 3.06   
  ADT; arogenate/prephenate dehydratase comp122512_c1_seq4 EC: map00400 2.89   
  aroDE; 3-dehydroquinate dehydratase / shikimate dehydrogenase comp122402_c0_seq2 EC: map00400 2.48   
  HPD; 4-hydroxyphenylpyruvate dioxygenase comp121627_c1_seq28 EC: map00400   3.45  
  CYP73A; trans-cinnamate 4-monooxygenase comp110708_c0_seq2 EC: map00400   3.15  
Volatiles relative metabolism
Terpenoid backbone biosynthesis
  dxs; 1-deoxy-D-xylulose-5-phosphate synthase comp96886_c1_seq1 EC: map00900 2.71 3.18  
  dxs; 1-deoxy-D-xylulose-6-phosphate synthase comp96886_c2_seq1 EC: map00900 3.8 4.49  
  dxs; 1-deoxy-D-xylulose-7-phosphate synthase comp109831_c0_seq1 EC: map00900 4.93 2.39  
  dxs; 1-deoxy-D-xylulose-8-phosphate synthase comp116264_c0_seq1 EC: map00900 2.29 2.42 2.57
  all-trans-nonaprenyl-diphosphate synthase comp117530_c0_seq2 EC: map00900 2.14   
  chlP; geranylgeranyl reductase comp109556_c0_seq1 EC: map00900 2.75 2.3 1
  GGPS; geranylgeranyl diphosphate synthase, type II comp120820_c1_seq1 EC: map00900 4.79 4.58  
  HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) comp117873_c3_seq2 EC: map00900   2.88  
  ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase comp113456_c0_seq1 EC: map00900   2.05  
  DHDDS; ditrans,polycis-polyprenyl diphosphate synthase comp109846_c0_seq1 EC: map00900   −2.56 −1.14
Monoterpenoid biosynthesis
  (+)-neomenthol dehydrogenase comp115928_c0_seq1 EC: map15095   3.54  
Diterpenoid biosynthesis
  gibberellin 3-beta-dioxygenase comp109499_c0_seq1 EC: map00904 3.08 2.62  
  gibberellin 2-oxidase comp110716_c0_seq2 EC: map00904   6.36  
  gibberellin 20-oxidase comp96433_c1_seq1 EC: map00904   2.1  
Tropane, piperidine and pyridine alkaloid biosynthesis
  EHMT; euchromatic histone-lysine N-methyltransferase comp119529_c0_seq11 EC: map00310 −3.13   
  TR1; Tropinone reductase 1 comp115174_c0_seq6 EC: map00310 6.27 6.19 −6.67
  TAT; tyrosine aminotransferase comp119579_c0_seq3 EC: map00310   2.72  
Carotenoid biosynthesis
  crtB; phytoene synthase comp118863_c3_seq1 EC: map00906   2.76  
  PDS; 15-cis-phytoene desaturase comp117265_c0_seq1 EC: map00906   3.46  
  lcyB; lycopene beta-cyclase comp109180_c0_seq1 EC: map00906   8.16  
  ZEP; zeaxanthin epoxidase comp119396_c0_seq1 EC: map00906   4.15  
  NCED; 9-cis-epoxycarotenoid dioxygenase comp118160_c0_seq2 EC: map00906   6.16  
  crtZ; beta-carotene 3-hydroxylase comp104888_c0_seq1 EC: map00906   2.79 −2.56
  LUT5; beta-ring hydroxylase comp118802_c0_seq3 EC:1.14.-.- map00906    −2.5
Phenylpropanoid biosynthesis
  cinnamyl-alcohol dehydrogenase comp99291_c1_seq1 EC: map00940   8.5 2.82
  beta-glucosidase comp121918_c0_seq5 E3.2.1.21 map00940   5.01  
  phenylalanine ammonia-lyase comp115247_c0_seq34 EC: map00940   2.14  
  coniferyl-aldehyde dehydrogenase comp113314_c0_seq1 EC: map00940   3.45  
Steroid biosynthesis
  SQLE; squalene monooxygenase comp112679_c3_seq1 EC: map00100   2.89  
  FDFT1; farnesyl-diphosphate farnesyltransferase comp113462_c0_seq1 EC: map00100   2.84  
  DET2; steroid 5-alpha-reductase comp82870_c0_seq1 EC: map00100    −2.56
Naphthalene degradation
  frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase comp110100_c0_seq1 EC:    13.84
The other important metabolism
Isoquinoline alkaloid biosynthesis
  TAT; tyrosine aminotransferase comp119529_c0_seq11 EC: map00950 −3.13   
  tyrosine decarboxylase comp100681_c0_seq1 EC: map00950 7.51 4.26  
Benzoate degradation
  acyP; acylphosphatase comp107772_c0_seq1 EC: map00362   2.26  
  paaH; 3-hydroxybutyryl-CoA dehydrogenase comp103732_c0_seq1 EC: map00362   −2.08  
Butanoate metabolism
GABA glutamate decarboxylase comp118227_c0_seq2 EC: map00650 2.2 2.07 −1.27
  POP2; 4-aminobutyrate---pyruvate transaminase comp112962_c5_seq1 EC: map00650 2.78 3.51  
  ECHS1; enoyl-CoA hydratase comp110838_c0_seq1 EC: map00650    29.37
  HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase comp110054_c0_seq1 EC: map00650    18.24
Flavonoid biosynthesis
  CYP73A; trans-cinnamate 4-monooxygenase comp110708_c0_seq2 EC: map00941 2.57 3.15  
  caffeoyl-CoA O-methyltransferase comp98665_c1_seq1 EC: map00941 2.04 3.75  
  FLS; flavonol synthase comp105197_c1_seq1 EC: map00941 3.25   
  flavonoid 3'-monooxygenase comp112481_c0_seq1 EC: map00941 2.04   
  ANR; anthocyanidin reductase comp115221_c0_seq4 EC: map00941 2.48   
  flavonoid 3'-monooxygenase comp112481_c0_seq1 EC: map00941   2.39  
  ANR; anthocyanidin reductase comp115221_c0_seq4 EC: map00941   2.96  
  LAR; leucoanthocyanidin reductase comp112210_c1_seq1 EC: map00941   2.31  
  DFR; bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase comp79789_c0_seq1 EC: map00941   2.09  
  CHS; chalcone synthase comp124817_c0_seq1 EC: map00941    1.87
Metabolism of xenobiotics by cytochrome P450
  alcohol dehydrogenase comp80279_c0_seq1 EC: map00001 6.97 5.95  
  GST; glutathione S-transferase comp104802_c0_seq1 EC: map00001   −4.54 1.05
  UGT; glucuronosyltransferase comp115835_c0_seq1 EC: map00001    19.13
  frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase comp110100_c0_seq1 EC: map00001    13.84