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Table 7 The up-regulated expression of bHLH TFs in each comparison

From: A transcriptomic analysis of bermudagrass (Cynodon dactylon) provides novel insights into the basis of low temperature tolerance

Genotype GeneID log2 ratio P-value q-value Gene description
R1 Comp150821_c0 1.0287 0.0001158 0.0017186 Transcription factor ILR3 OS = Arabidopsis thaliana GN = ILR3 PE = 1 SV = 1
  Comp157296_c0 1.3757 1.45E-25 9.54E-24 Transcription factor PIF5 OS = Arabidopsis thaliana GN = PIF5 PE = 1 SV = 1
  Comp156748_c0 1.4473 8.95E-07 1.82E-05 Transcription factor bHLH49 OS = Arabidopsis thaliana GN = BHLH49 PE = 2 SV = 1
  Comp152649_c0 4.6376 5.91E-14 2.23E-12 Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1
  Comp151458_c0 4.8684 5.49E-93 1.38E-90 Transcription factor ORG2 OS = Arabidopsis thaliana GN = ORG2 PE = 1 SV = 1
  Comp155000_c0 1.8371 4.24E-22 2.47E-20 Transcription factor bHLH140 OS = Arabidopsis thaliana GN = BHLH140 PE = 4 SV = 1
  Comp152649_c0 4.6376 5.91E-14 2.23E-12 Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1
R2 Comp150821_c0 1.0589 1.49E-05 0.0002559 Transcription factor ILR3 OS = Arabidopsis thaliana GN = ILR3 PE = 1 SV = 1
  Comp151458_c0 5.295 2.09E-133 1.03E-130 Transcription factor ORG2 OS = Arabidopsis thaliana GN = ORG2 PE = 1 SV = 1
  Comp152402_c0 2.7546 7.47E-25 5.06E-23 Transcription factor bHLH92 OS = Arabidopsis thaliana GN = BHLH92 PE = 2 SV = 1
  Comp152649_c0 4.3428 7.24E-12 2.46E-10 Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1
  Comp155000_c0 1.3155 4.75E-11 1.52E-09 Transcription factor bHLH140 OS = Arabidopsis thaliana GN = BHLH140 PE = 4 SV = 1
  Comp155113_c1 6.4166 4.35E-06 8.08E-05 Transcription factor bHLH100 OS = Arabidopsis thaliana GN = BHLH100 PE = 2 SV = 1
  Comp156748_c0 1.7023 1.19E-10 3.70E-09 Transcription factor bHLH49 OS = Arabidopsis thaliana GN = BHLH49 PE = 2 SV = 1
  Comp157296_c0 1.6831 3.05E-47 3.96E-45 Transcription factor PIF5 OS = Arabidopsis thaliana GN = PIF5 PE = 1 SV = 1
  Comp158090_c0 2.7887 1.36E-05 0.000235 Transcription factor bHLH87 OS = Arabidopsis thaliana GN = BHLH87 PE = 2 SV = 1
  Comp161381_c0 1.7318 4.00E-18 1.99E-16 Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1
R3 Comp151458_c0 5.1734 1.12E-145 6.96E-143 Transcription factor ORG2 OS = Arabidopsis thaliana GN = ORG2 PE = 1 SV = 1
  Comp152649_c0 3.9009 2.63E-10 1.03E-08 Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1
  Comp155000_c0 1.8218 1.13E-32 1.28E-30 Transcription factor bHLH140 OS = Arabidopsis thaliana GN = BHLH140 PE = 4 SV = 1
  Comp158090_c0 2.3542 8.95E-05 0.0017648 Transcription factor bHLH87 OS = Arabidopsis thaliana GN = BHLH87 PE = 2 SV = 1
  Comp157296_c0 1.3594 8.99E-42 1.32E-39 Transcription factor PIF5 OS = Arabidopsis thaliana GN = PIF5 PE = 1 SV = 1
R4 Comp144776_c0 4.2436 2.26E-08 1.20E-06 putative HLH DNA-binding domain superfamily protein [Zea mays]
  Comp152402_c0 2.1585 9.87E-18 1.17E-15 Transcription factor bHLH92 OS = Arabidopsis thaliana GN = BHLH92 PE = 2 SV = 1
  Comp161008_c0 1.0341 2.20E-09 1.31E-07 Transcription factor bHLH62 OS = Arabidopsis thaliana GN = BHLH62 PE = 2 SV = 1
S1 Comp152402_c0 5.684 2.77E-50 1.01E-47 Transcription factor bHLH92 OS = Arabidopsis thaliana GN = BHLH92 PE = 2 SV = 1
  Comp152681_c0 2.2077 2.22E-24 3.30E-22 Transcription factor bHLH113 OS = Arabidopsis thaliana GN = BHLH113 PE = 2 SV = 1
  Comp153254_c1 2.4778 2.26E-07 8.65E-06 Transcription factor bHLH35 OS = Arabidopsis thaliana GN = BHLH35 PE = 2 SV = 1
  Comp161381_c0 1.8375 5.99E-18 6.18E-16 Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1
S2 Comp150821_c0 1.9992 1.56E-10 3.08E-09 Transcription factor ILR3 OS = Arabidopsis thaliana GN = ILR3 PE = 1 SV = 1
  Comp151458_c0 6.2918 2.52E-122 5.90E-120 Transcription factor ORG2 OS = Arabidopsis thaliana GN = ORG2 PE = 1 SV = 1
  Comp152649_c0 4.7211 7.00E-29 3.47E-27 Transcription factor bHLH47 OS = Arabidopsis thaliana GN = BHLH47 PE = 2 SV = 1
  Comp153254_c1 2.4642 3.92E-07 5.64E-06 Transcription factor bHLH35 OS = Arabidopsis thaliana GN = BHLH35 PE = 2 SV = 1
  Comp155000_c0 2.3306 1.24E-21 4.69E-20 Transcription factor bHLH140 OS = Arabidopsis thaliana GN = BHLH140 PE = 4 SV = 1
  Comp155113_c1 4.9895 0.0001235 0.001231 Transcription factor bHLH100 OS = Arabidopsis thaliana GN = BHLH100 PE = 2 SV = 1
  Comp156748_c0 2.3306 7.63E-17 2.27E-15 Transcription factor bHLH49 OS = Arabidopsis thaliana GN = BHLH49 PE = 2 SV = 1
  Comp157296_c0 1.5876 1.65E-21 6.21E-20 Transcription factor PIF5 OS = Arabidopsis thaliana GN = PIF5 PE = 1 SV = 1
  Comp158090_c0 3.0266 1.90E-06 2.52E-05 Transcription factor bHLH87 OS = Arabidopsis thaliana GN = BHLH87 PE = 2 SV = 1
  Comp161381_c0 1.1771 2.24E-05 0.0002535 Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1
S3 Comp152402_c0 3.652 1.49E-16 2.14E-14 Transcription factor bHLH92 OS = Arabidopsis thaliana GN = BHLH92 PE = 2 SV = 1
  Comp161381_c0 1.7077 1.87E-31 6.20E-29 Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1
S4 Comp152681_c0 1.6033 3.85E-16 7.24E-14 Transcription factor bHLH113 OS = Arabidopsis thaliana GN = BHLH113 PE = 2 SV = 1
  Comp161381_c0 1.1696 6.53E-10 6.46E-08 Transcription factor MYC4 OS = Arabidopsis thaliana GN = BHLH4 PE = 2 SV = 1